RNA id: TU141465


Basic Information

Item Value
RNA id TU141465
length 3947
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G112940
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22877389 ~ 22881356 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgttcctaataatcctttaggtgagtgtatatatatatatatatatattttaataaatagtaCCATCAATTTCTGAGGCTAGGCACTGGAATAAAGCCATGGCTATTATTTGTGATGCTTTGTTTTATGCCATGTTGATGTTATGATTGTATACGTCTCCATTAGGATGAATGCATAAATATCATACTGTTACTTAGGTTGGAATTTCAAGGTTCCTGTCTTTCAAGTACGAATGCTGACTGAATACAACCCTGGAATAGGTGAAGAAATTAAAACCAGAATCAATCAAGTCTTTCAGTGGGAATCACTGGTCTGCTTTCCTAAATACAAATGGACTCCAGTTTTTCTTAAATCTTCATCCAGTTCAACCACATGGCATGTAAACATCAAAACAGTCCTCTTGCTAGAATGGAAAGATTCAccctataaataaatagtgcacCTTGGTCACACACTCTTCACagtacagcatttattttgtattgtccccccacccccccaccatgTTTCGAAGGTTGAGTACAGACTGTTACATCATTTTTAGCAGTAGGCCAGTTACTTCAGTCTGTAACATCAGGCCCCACCCTGCAGATACTCCATGCCCTGAGTTTCAGAACGTCACTGAGCAGTTCGGTGGAGTACAATATAATATCAACATGCAATATTTTAACAGGAATTTAAAGCATCCGTCCAACCAAAGATTGTGatatttttgtacattgtttggtaatacaatcatttaaaaaaatacattgtataattttTCGTTTTATCTTGAAAAGAAGGAACATATACACACTTATTTCTACGTAGTTCAAATCTAGACCTAAACTTTAACTGCAGGTTTGGTCTGTACTGAGATAATCCCTGTGCTTCACCTCCACTTTGCAGGGACAGTGTCAATGTTTCtgatcttttaaaattaatatatattctgcaCCGGTATGGAATTGCATGGCGAGAGCCGGTCTATCAACCAACATGATGATGTCGTAAAGCTAGTAGTGTAACACTGATTCAAGGTCCCAAATATTGTATTGCACTCTCCAGTCCTGGGACCAGCTGCTTCAAACACTAAGTCATACAACAGCTTTTCCTCTCATGTAGTGTATTGTCTTCAATTTGGTATGGGACTTTGTGCCACATACTTAAATTCGAGGAACACCTAAAGGAGAAACCAAAGACTAAGGGGGAACTATTAGGTTAGGTGTCCCATTGGGTGTTTTATGTAGCTGGCCACAGACCAGCATCCtgtagaacacctctgggattaACCAGAAAGATCGGGAAGACTAACTTCTCTTTTTCCCCTCGAGTTGGCCGTGAGAGGAATGGAACGATATTCATCCAGTGAACTTTCAAAAAGGGCCAAAACAGTGATCAAAAGTGAGTGTATGACATGCATTACATTACGTACTGctgctgcattttatttcctgtccCAGAACATCTTGTTAAATATTCATATCTCAGTTTAAAAGTtcactgtataaatatagatgctatatttttttaattcccaatAAAAATTCAGTGCAACAGAACTGAAACTGGCAGAAATGTAGTTTAATAGGAGCAGTTTAATGACACTATCAGTATAGTCCCCCGGCATCCCAGGAGCAAAGTCAAGCTGAAGCAGAGTACAGCCCTCCACTGCTTCCCTGATACTATTTCTATTCTACATCTTCTCAAGTCACTGAGAATGACTCCAAAAATATTGTCACCTTAAACAAagcagtgcattttatttttctagttatGACTGACTGTTTTAAAGacttaaattgaaaacattgaaGCTTTATGGAACGatttatggaaaacaaaatggaatgtagtaacatttttcttttcttttttttaattccttcgGCCTGTTTTTTTCCACTCGAGTCAGAAGTGGAGAGAGTATATTCATGTAGGAGCTGTGGGTACTTCACCTCTGGCTATTCTTTCTCTACAGTCATATTCTGAGAGGGAATCCTTCATAATACCTCGATTTACTGTGCATTTGCAATATTTACATgagtaattatatatatcattattctCCTCAAATACCTATTTTCAAAAGGACCTTGTACAGAGAATCTATAAATTGAATAAAAAGCCTTGTAACTTTGAAGTATGTAATATAATGTGCTTGTGAAAGTAATCTGAAActaatcattttttatattatgtgaAAGAGCTCGAGGCCGGGGGTCTCGGACCTTCTTCTActtaagtgaaaaaatattttttcattgtccAACTCTTGCAGGACAGAAATGTTGCTATTTTGGTCTATTACAGCACCGACAGGACATTTCAATCTCAAATTTACTTCTGAAACCAAGgggaatgtatttttaatcaacaaatgtatatataacactAGGTGAGGTAGGTGGAGTTTAAATAGTCTGTAAAATAACCTATTATCTGCCTGTGATTAAAACTATTTAGACGCACATTAGCGATGGAGAGTTTTTGAAAAtcttacccccccccccaaaaaaaaaagtgttacttATATCTTCCTCGATTGCTTTCATATCTTTTACTAGCTTTTGTGAGGGGGGGGCAACCTTTTCATTTGCATTCTTAAACCCTCCATCCCTGTAATTGTGTAATagatttatttcagttcagtcaGTAGTACAGGTCCACTGCCTAAACTTGACACGTTTAGGGGTCTGCAAATATGtatgattacaaaataaaaagcttacaGCTACAAATATGACGCATCATGTACTGCAGTTTAAGACTATACCAAGAGGAGGGTTGGTTTGTGGGGGGATTCCATAATAAGCCGCTCCGCATTTGAGACTTTGATGTTTTTCATCCTTAGTTAAGCAGGATTCCAAAAAGGACGTGTATCTattctgtctgtgctgtgtttgaCAATTATGCACCAGCTTTAGTGATAGAATCGCCCACTGAAAGATGGAAGAATGTTACAGATTCTGTTTGCACTGTATACTGCACtctgtagtgttgtgtagtaaATCTCTTGGGTTTATTTAACTGTTCATGTAACATTTCCAGGTCAGTTGCTCcctaaagaaatataaaacaaaatctaaattcaaaataaattaagcttgTGAAGCTGgtgtaacaaacaaaaagaaaaacatcataGTCAGACATTAATAAGAAATCCCCATCTAATTTCACTGTGAAGGTGAGCAATGCACGTCTGCAGAAGAAACAGTGGGATCCGAGCCCGAACTTTCAGTATATAGACTAAACAACACTATTGAAGTTTTGTAGACTCTTTACAAGAACAAGATGGCTATTCTCATCTGTCTGAAACAGCACTTTCACAGCAGCAGAACAACACAGGTTTAATACTTAATAAAATACCTACATCTTTagatttttaaacaaagtgGAAATCAATTCTGTACATATGCAATCTCTATACAGTTTACAGTAATTCacggaaaaaaaaggaaaagataaTTTGACTACTTGGTTCTTtgtaacagatttaaaaaactgaaaactaaaaacaaaacaaaatacactaaattaatgagcaaatatatatatataaaaaaacaacaacccataAATCATTGCACCTGCCTCAAATTTGTGATTCCTTACcatacagtacaaaacaaataaaataaataaaactagcGAGATTGTCAGTGACTGGGACCGTCGATTCCAAACCGGCCATTTGCAGAGCCTCTGGGACGAACGGCAGACCAGTGTAATGAAGTTTTCTACGCTGTGCCTCCGTGGCAAATGAAACGGCCACCTTCTGTTTGGCTTTCTTCAGCGTCGGCAAAACTGAGAGGGGAAAAACCCAAGAAACCTGGAACGCACGCTTCCGCAGCGGAGACGGGCCGCTTAATCCGACGTATCCAGGGGAAACGAAAGGTGGCGTGGGAATCCTGAGATTCAACACTGGGGAACGTCTCGACACGGACCCTACTAATAGGGg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141460 lncRNA upstream 12881 22863985 ~ 22864508 (+) True G112938
TU141360 lncRNA upstream 194202 22682960 ~ 22683187 (+) True G112868
TU141317 lncRNA upstream 421425 22455762 ~ 22455964 (+) True G112832
TU141288 lncRNA upstream 565929 22294688 ~ 22311460 (+) False G112807
TU141289 lncRNA upstream 576460 22294688 ~ 22300929 (+) True G112807
TU141481 lncRNA downstream 71824 22953180 ~ 22956200 (+) True G112954
TU141482 lncRNA downstream 75892 22957248 ~ 22958605 (+) True G112955
TU141602 lncRNA downstream 627793 23509149 ~ 23554741 (+) False AMCG00006865
TU141628 lncRNA downstream 699159 23580515 ~ 23597219 (+) True G113075
TU141629 lncRNA downstream 699159 23580515 ~ 23597219 (+) False G113075
AMCG00006852 mRNA upstream 15352 22826983 ~ 22862037 (+) True AMCG00006852
AMCG00006853 mRNA upstream 60026 22809303 ~ 22817363 (+) True AMCG00006853
AMCG00006851 mRNA upstream 71783 22774720 ~ 22805606 (+) True AMCG00006851
AMCG00006850 mRNA upstream 104760 22754688 ~ 22772629 (+) True AMCG00006850
AMCG00006849 mRNA upstream 162545 22689184 ~ 22714844 (+) True AMCG00006849
AMCG00006856 mRNA downstream 267650 23149006 ~ 23157435 (+) True AMCG00006856
AMCG00006857 mRNA downstream 325837 23207193 ~ 23282722 (+) True AMCG00006857
AMCG00006861 mRNA downstream 403382 23284738 ~ 23289336 (+) True AMCG00006861
AMCG00006860 mRNA downstream 422099 23303455 ~ 23320773 (+) True AMCG00006860
AMCG00006859 mRNA downstream 453730 23335086 ~ 23343567 (+) True AMCG00006859
TU141018 other upstream 1674188 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 1828351 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 1939219 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 9833941 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 13310038 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 1150757 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 1423423 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 1627647 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 2736711 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 2933699 25815055 ~ 25832942 (+) True G113400

Expression Profile