RNA id: TU141481


Basic Information

Item Value
RNA id TU141481
length 3021
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G112954
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22953180 ~ 22956200 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGCTGtagcaatgcatttatttaaacatgtatttccaatatatttttatttcttcagaaaTATTTACCTACAAAAATATTTGCATGGTCCTATAATGTGTAGTGCATTAGATTTTCATGCTTGATAAAATATTTCAACCTCCCTAAAAATGTCAGTACATATGTCCTTAACTTTTAGCATACTAGAAATATTCAGAAAGAAAGTTTTTAACTATgccagttttaaaaacaatgacaatttaCAATTAATATCTCCCTTTTCTCAGGTTTCATAAGTTCATAAcggacaaataataataaaaaaaggatttagGGTAACATctaaacagttaaataaatcactgaatcATCTTTGGCAATACACATGCTTATCTGGTgatattaagaaacaaatgtgctacatacaatatatttaaaatgtaacaaaaatttGAGCAAAACATACCAACACAAAATAGTTGTATgccataaaatatataatacgaGAAAATATCTTGCAATAAGATATTGTATCCCAAGCTTTTCACTTGGGATACAACAGATAACTGACATATTTCCTCCACAAAAAGTaatttttgaattaaattaaaaacaaaatactacgCTATGGCATAGACCTTTTATATTCATTATGACAAGCttgatttatttgtcagtgATTGAGAAATACATTACTTGTAAGACTCACTctcacaaaatatttattctgaaagGTCACGATAACCTCATGTGGGAATTTCAGTTTATGTAAACAATTAAGATGTATTTTTGAGGCTTAATGAAGATGAGATGGAATTAAATACAGAGtgtgtaaatacacaaatattactAAATGTATCCTTTTGTTATGAAGCGATAATATGAATGCCAGATTGAtacaataacatttacaaaatattttgtaaaaatcttCCTTAACATAtcatagtgttttaaaaataaaaccattcttGGTTAGTCTTTTTTCTACTCACACTGATTACaactaaaatgcaataaataggCCCTTGCAAAGCAAATAGCaaccattaaacaaataaagcaattaaaacaaacttaacCTCCACATATGAGTCACACAATCTTGAGTTATGTTGGACATTTTGTTCCTCAATAAATTTTGCTTTCTGTCATAACACtaagttttaaaagtaataagTAATTTGAAAGATGCAGAAActtaaagataattaatttggtattttgttttcagtcaagTAGGACAGGAAATGTTTTATAAGTAATTCTGCTGGTCCAGTAACGTTTTCACATTTGATTAAACTATTTTGTCAAGGGTATGTAGATAAGCTGGTGAAAATCTTCATTCTAAATACTTAtggttttattaaatgaaaagtaaaactTTCTTGAAGCTTTGcttatttcattataaaatagtTCTCTCTgttgagctgtttttttttggatttCTATAACTATATTTAAGACATTAAATCGAGTGCAAAACTAAAGCTCATTTTAAGTATTCCCCTGTAAATATGAATCTTCAGACAACCATTAAGACTTTATAgtcttaataatatatattaaccaTATACTTATATAGTCTTAATAACGTATtggatacatacattttatttcagttgggCTTATTTTAGGTGACTCGGGAAAGCAGAAAAATCTATTTCAGCACTTCTCTATTTCTTCTGGTTTACATGTGTCCAGCTGCGTGTTTTGGGATTGGAAGTTGCCTCGGTGAAAATATTGCATTatgctaaataataatggaatttTATTCATAAAGTATTTACTTTGGACTTTCAACCACAGTTGTCGTATTATTTTCCGCATCATTCTTCCTCACTTGTGTTTGCATAGCTACCACATTTTCTGTGTCTCTGGTAGTTGTGTATGTACTCCAGTAAGTAACAATTGTCATTTTCTCTTGAatcgaatatatatatatatatatatatatatatgttaatttgaaaaatagGTACATACAATAATTTTCTGTTCAAATGGATATtgtgtgaatttaaatattagataggctactttaaaatgaaaacgttTTATAGAATATACAGAGTAAACCAATATCAGGTAATGAAGTAGAAAAAACAGCTGTGCAATTCTAAAGCATACCTTgcgagaagaaataaaaaaatattaaacaagtgCATATTCTCATGATAAACCTGAATCTGACTTACAAGACAGTAACAGGTAGCAGGTTGTCAAAGGTAAAATCAAGTTACAATACAGCCAATAACACAAATGCAAAGTTCCAGAGCTAcagatgtttttgtattcaattttttGTCCAATCAGTTATCAACTAAATTGCATCTTAATATGTGGAAAACTTCAGGTCTTTCAACATTGGACAAGAAAACAATCCATTTAGTAACAATTCGTTGAATGATGTATACATTCCTACGTACTgacactttaaatacattaaactgttCAACTGTTTTATCTGTAATCCCTTATAAAACGAAATTTTCCCCccattgtgtttttcctttggGGGCGTGGGAGGCTATTTCTACGATCTTTAAAAGTCGGTCGGTTTGCAAGTGTAtatcagttaaataaataaatacaaaataaataaacacttcgAGAGATTGCTTTAGGATTCAACTGGGATGGACCTGCAGGATTTGGGGGAGTTGTCGTAGTCCCTCCAGGTCCCGATGCTGCAGTCGGGACTCCGGTTGTGGATCCTGGTTAGGAGCGTGTTCCTGCGCAGGCTGCTGTCCGAGTCCTGCTTCTTAAACCTCGGCCTCATCTGCCGGCTGCAGGGGAAGCAGTTGGCAAAATCCTGCAAAAGGTGCCCGCTGAAGATCATGTAAATCCACGGGTTGCAGCAGCTGTTCAGGCTGGCGAGCAGCGCCGTCAGCGTCACGGCCGTGTTCTCGGACTCTGGGGGACAGAAAGCCGAGAGACAAGACTTCAGCTGCGCCGCGTCTCTGCGCCAGATGAACCGGGTTTGCGCAACCGCCCTGCGCAGACCATTTCTCAACAGCGCTTGGCAACAACACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141465 lncRNA upstream 71824 22877389 ~ 22881356 (+) True G112940
TU141460 lncRNA upstream 88672 22863985 ~ 22864508 (+) True G112938
TU141360 lncRNA upstream 269993 22682960 ~ 22683187 (+) True G112868
TU141317 lncRNA upstream 497216 22455762 ~ 22455964 (+) True G112832
TU141288 lncRNA upstream 641720 22294688 ~ 22311460 (+) False G112807
TU141482 lncRNA downstream 1048 22957248 ~ 22958605 (+) True G112955
TU141602 lncRNA downstream 552949 23509149 ~ 23554741 (+) False AMCG00006865
TU141628 lncRNA downstream 624315 23580515 ~ 23597219 (+) True G113075
TU141629 lncRNA downstream 624315 23580515 ~ 23597219 (+) False G113075
TU141646 lncRNA downstream 765182 23721382 ~ 23721632 (+) True G113090
AMCG00006852 mRNA upstream 91143 22826983 ~ 22862037 (+) True AMCG00006852
AMCG00006853 mRNA upstream 135817 22809303 ~ 22817363 (+) True AMCG00006853
AMCG00006851 mRNA upstream 147574 22774720 ~ 22805606 (+) True AMCG00006851
AMCG00006850 mRNA upstream 180551 22754688 ~ 22772629 (+) True AMCG00006850
AMCG00006849 mRNA upstream 238336 22689184 ~ 22714844 (+) True AMCG00006849
AMCG00006856 mRNA downstream 192806 23149006 ~ 23157435 (+) True AMCG00006856
AMCG00006857 mRNA downstream 250993 23207193 ~ 23282722 (+) True AMCG00006857
AMCG00006861 mRNA downstream 328538 23284738 ~ 23289336 (+) True AMCG00006861
AMCG00006860 mRNA downstream 347255 23303455 ~ 23320773 (+) True AMCG00006860
AMCG00006859 mRNA downstream 378886 23335086 ~ 23343567 (+) True AMCG00006859
TU141018 other upstream 1749979 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 1904142 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 2015010 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 9909732 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 13385829 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 1075913 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 1348579 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 1552803 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 2661867 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 2858855 25815055 ~ 25832942 (+) True G113400

Expression Profile