RNA id: TU141507


Basic Information

Item Value
RNA id TU141507
length 977
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G112979
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23153868 ~ 23154903 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taatttaaatggcTGAGACCCTGTGCAGTACTTATCACAGATCTTTCTGACACTGTGGGACTACAGGAGAGGAAGACTGAGCCAGGCAGCTGGACACCAGGGGGAAAGACATGAACTATTCAAACTGTAGAAGAGTAACAGGGGGGGGCAGCAAGAGGAGATATAGGGagagacaggagacaggagGTAGGAAGGGACAGCATGGTGAAACGAGCTGTGTCTCAGGACTAGGTATTTAGCATTTccttgaaactccacgaggtgagatcttgcatggagccccagaccgagggagactgacagttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgataTCCTTGGACacctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtctcagctcgttacctgtataaaagacacctgggagccagaaatcttgctgattgataggggatcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttgtggatgtttttgttgttattctgtctctcactgttaaaatacatctaccattaaaatcatagactgatcatttctttgtcagggggcaaacatacaaaatcagcaggggatcaaatactttttttccctcactgtatatatatatatatatatatatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttgactattattgataggatagcatcttgcagttgatggagatttgtgggatgcacatcca

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141483 lncRNA downstream 198791 22953185 ~ 22955077 (-) False AMCG00006854
TU141480 lncRNA downstream 212198 22941459 ~ 22941670 (-) True G112953
TU141401 lncRNA downstream 381183 22766273 ~ 22772685 (-) True G112903
TU141373 lncRNA downstream 482985 22669860 ~ 22670883 (-) True G112878
TU141291 lncRNA downstream 895894 22257549 ~ 22257974 (-) True G112809
TU141550 lncRNA upstream 166174 23321077 ~ 23321771 (-) True G113013
TU141551 lncRNA upstream 168030 23322933 ~ 23323151 (-) True G113014
TU141619 lncRNA upstream 392894 23547797 ~ 23554739 (-) True G113066
TU141622 lncRNA upstream 413252 23568155 ~ 23569274 (-) False AMCG00006866
TU141786 lncRNA upstream 1160829 24315732 ~ 24321862 (-) True G113209
AMCG00006854 mRNA downstream 195562 22953176 ~ 22958306 (-) True AMCG00006854
AMCG00006855 mRNA downstream 225463 22881514 ~ 22928405 (-) True AMCG00006855
AMCG00006847 mRNA downstream 502351 22626401 ~ 22651517 (-) True AMCG00006847
AMCG00006846 mRNA downstream 546485 22592099 ~ 22607383 (-) True AMCG00006846
AMCG00006848 mRNA downstream 564130 22587660 ~ 22589738 (-) True AMCG00006848
AMCG00006862 mRNA upstream 132353 23287256 ~ 23302174 (-) True AMCG00006862
AMCG00006864 mRNA upstream 220464 23375367 ~ 23376805 (-) True AMCG00006864
AMCG00006866 mRNA upstream 413981 23568884 ~ 23571133 (-) True AMCG00006866
AMCG00006873 mRNA upstream 476136 23631039 ~ 23752269 (-) True AMCG00006873
AMCG00006876 mRNA upstream 694742 23849645 ~ 23868247 (-) True AMCG00006876
TU140946 other downstream 2204032 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 2917662 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 3517943 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 4812658 18339270 ~ 18341210 (-) False AMCG00006754
TU140351 other downstream 5520423 17632891 ~ 17633445 (-) True G112059
TU141596 other upstream 249272 23404175 ~ 23407207 (-) True G113050
TU142176 other upstream 3345112 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 4247697 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 5112359 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 5136552 28291455 ~ 28292598 (-) True G113775

Expression Profile