RNA id: TU141629


Basic Information

Item Value
RNA id TU141629
length 420
lncRNA type read_through
GC content 0.55
exon number 5
gene id G113075
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23580515 ~ 23597219 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGCCCCAACCCTCTGGACTACGGTCACACCTCCACCCTGCACATCAACCACAAGCAGCCTCTGCCCAAACACCACCGTCGCTTTGAGATCCGCACCTTCCAGTTCATGGATCATGTGACTCACCGCTACCTCCGTGAGGAGATCTACTTCATGTGCTCCACGGAGGTCTGCTCCCCATCAGCCAAGCAGTGTGTGGAAGGATGCTTTGATGGGCGCAAGCTCCCTGTGGTTGAGGACCCCAATGCTGATGAGCACTGTACCAGGAAGCCTTGCCCAGGAAAGGCCAATAGATCTGCAGGCCTCCCAGCCCAGTGACTGGGGCTGCAGTGGAACCCATTTCTCTCCTGGTCTTGGCATGATCTCCAGCTGCCTGATGACCAGCAATGCAACTGGTTGTAGAACGTTGATTTGAATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141602 lncRNA upstream 25774 23509149 ~ 23554741 (+) False AMCG00006865
TU141482 lncRNA upstream 621910 22957248 ~ 22958605 (+) True G112955
TU141481 lncRNA upstream 624315 22953180 ~ 22956200 (+) True G112954
TU141465 lncRNA upstream 699159 22877389 ~ 22881356 (+) True G112940
TU141460 lncRNA upstream 716007 22863985 ~ 22864508 (+) True G112938
TU141646 lncRNA downstream 124163 23721382 ~ 23721632 (+) True G113090
TU141731 lncRNA downstream 479534 24076753 ~ 24288917 (+) False G113159
TU141732 lncRNA downstream 479534 24076753 ~ 24288917 (+) True G113159
TU141736 lncRNA downstream 479534 24076753 ~ 24257385 (+) False G113159
TU141805 lncRNA downstream 773499 24370718 ~ 24372835 (+) True G113224
AMCG00006865 mRNA upstream 27216 23524842 ~ 23553299 (+) True AMCG00006865
AMCG00006867 mRNA upstream 88420 23491010 ~ 23492095 (+) True AMCG00006867
AMCG00006863 mRNA upstream 177640 23396869 ~ 23402875 (+) True AMCG00006863
AMCG00006858 mRNA upstream 211413 23354606 ~ 23369102 (+) True AMCG00006858
AMCG00006859 mRNA upstream 236948 23335086 ~ 23343567 (+) True AMCG00006859
AMCG00006868 mRNA downstream 15781 23613000 ~ 23619393 (+) True AMCG00006868
AMCG00006869 mRNA downstream 26143 23623362 ~ 23628692 (+) True AMCG00006869
AMCG00006874 mRNA downstream 307545 23904764 ~ 23921123 (+) True AMCG00006874
AMCG00006879 mRNA downstream 420853 24018072 ~ 24022643 (+) True AMCG00006879
AMCG00006878 mRNA downstream 434870 24032089 ~ 24036105 (+) True AMCG00006878
TU141018 other upstream 2377314 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 2531477 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 2642345 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 10537067 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 14013164 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 434894 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 707560 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 911784 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 2020848 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 2217836 25815055 ~ 25832942 (+) True G113400