RNA id: TU141646


Basic Information

Item Value
RNA id TU141646
length 208
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G113090
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23721382 ~ 23721632 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttagaacaggggatgtgccaactgactggaagacggcaaatgtcataccaatccacaagaaaggggacaaaactgagccaggaaattacagaccaatcagtctcacctgcatcacccgtaaaatgaaaaccatattcttggagatagtcaacatgggtttagacgaggcagatcatgtcttactaatctattagagttctttgaaca

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0017119 Golgi transport complex cellular_component
GO:0099023 vesicle tethering complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141628 lncRNA upstream 124163 23580515 ~ 23597219 (+) True G113075
TU141629 lncRNA upstream 124163 23580515 ~ 23597219 (+) False G113075
TU141602 lncRNA upstream 166641 23509149 ~ 23554741 (+) False AMCG00006865
TU141482 lncRNA upstream 762777 22957248 ~ 22958605 (+) True G112955
TU141481 lncRNA upstream 765182 22953180 ~ 22956200 (+) True G112954
TU141731 lncRNA downstream 355121 24076753 ~ 24288917 (+) False G113159
TU141732 lncRNA downstream 355121 24076753 ~ 24288917 (+) True G113159
TU141736 lncRNA downstream 355121 24076753 ~ 24257385 (+) False G113159
TU141805 lncRNA downstream 649086 24370718 ~ 24372835 (+) True G113224
TU141814 lncRNA downstream 688425 24410057 ~ 24410304 (+) True G113233
AMCG00006869 mRNA upstream 92690 23623362 ~ 23628692 (+) True AMCG00006869
AMCG00006868 mRNA upstream 101989 23613000 ~ 23619393 (+) True AMCG00006868
AMCG00006871 mRNA upstream 124729 23596096 ~ 23596653 (+) True AMCG00006871
AMCG00006870 mRNA upstream 126991 23580895 ~ 23594391 (+) True AMCG00006870
AMCG00006872 mRNA upstream 140608 23574307 ~ 23580774 (+) True AMCG00006872
AMCG00006874 mRNA downstream 183132 23904764 ~ 23921123 (+) True AMCG00006874
AMCG00006879 mRNA downstream 296440 24018072 ~ 24022643 (+) True AMCG00006879
AMCG00006878 mRNA downstream 310457 24032089 ~ 24036105 (+) True AMCG00006878
AMCG00006884 mRNA downstream 583064 24304696 ~ 24335880 (+) True AMCG00006884
AMCG00006885 mRNA downstream 616276 24337908 ~ 24347363 (+) True AMCG00006885
TU141018 other upstream 2518181 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 2672344 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 2783212 20937497 ~ 20938170 (+) False AMCG00006811
TU139270 other upstream 10677934 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 14154031 9566213 ~ 9567351 (+) False AMCG00006565
TU141703 other downstream 310481 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 583147 24304779 ~ 24335916 (+) False AMCG00006884
TU141848 other downstream 787371 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 1896435 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 2093423 25815055 ~ 25832942 (+) True G113400

Expression Profile