RNA id: TU141805


Basic Information

Item Value
RNA id TU141805
length 2118
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G113224
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24370718 ~ 24372835 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAATGCATAAGAGTATACACAAccaacaagaaaatataaacagaCTTGTGTATCACATTacttgtgctttaaaatgtatttacacagtTTCCTGTGTTGTACAGAAAATGGAAATACTAAGGATAACAGGAGAAATACTAACACATTAGAAGCATATCCActtgaggaaaaacaaaccaacaaactgTGCATACTTTACAAGGTTTATATAACCTGTAGGCCAAACACAAAAAGATCCCTGATTTTCACTGCCTCCCCTACtggcacaaataaataaaccacaatttcAGCTGTCTggtgtaataaaaaaattataataaaaaaaaatatatatactttgatAAGACACAAAGATTTAGAAAACAATGTTGGTAGTGTAGAATTATATAAATGCACAGAAGTAGAAGTGTGGGAACAAAtcaaggagaaaataaattgtggttaaaaacaacaacaacaaaaaaacagtagaaTATACACTTCACTTGTGCTCCACAATATAATTGTACTGCTTTATGACCAGTTGCTTAGAACAACTTAAAGGTTTAAGGGAGTTTAAGGGTGTtgcacaaaaaacattaaaataatagtcGATACAATACTTATTCATTAGAGCAGGTGTTTAATCCAACCATCATCTGCAGTCATATGATGGAAAATACTATATTGCATTTCTGCACAATGATATAGATACAATGTGAAAGCTCTTGCTCAGTGGATCTAGTTGTATTAAGGCTCTCTCTTATCAGGAGCAGGCTTGTGTTCATAACTTTATGTCATGCTATTGAAAGTGTATTAAAACAGGTTCCATGAATGTGCAATATTGATATTCCTGTCTTTCCCAACCTCCAAAATGAATGCTTAGTTTCCAGTGTGTTAATCGCTGTTGCGAGATTGAAAGGACTTCCCTGGTATTTGCTTTCATctgtgaaaaaatgcattgcacATTGATGCAAGGGCTTCTTACTTTGTTGATTGTGTCTTGTGCCATTCTCAGTTGACACAGATTCAATCCCTGCTGTGTGCTGCTCTCGATTTCCTGACCCAAAACCAGTGTAGCATATCTTTTGTTCATACTCTTTCTTTAAATTTTAACTTTAAACTGGCCTGCACTGTGAAATAATTCAACGGCAAAGACTTACACATTTGCTCTTTAGAgaagtttttaaattttaaattgaaattaaaagaagagcttttttttttttttttcctcagtctagagttttagtttttaaagcagatctttaacaaatacattatcacCGTCATATTCTGAAGTCTGATACAGGGGGAACCATCTCCCACATTCCCTGAACAATTCTGAAAGACAAGtctgtgcattattttaaagaaaatgtggtACTGTTAGAAGATAtccaaaatatacattttaaggttCTGATTTAACTCAGAAAGTTTGacaaaatctaataaaatgtggatttattttctttacttctaTGGCCAGTGACTTGTCTTTTACTGTTTCTTGCCAGCCTCATGTTACCATTAATCAAAGGTATACAAATCATGAGGCTAGGTAAGTAAactgcagaaatgtaaaatataatccTGCTTTTGGTAGAAAATCTACAACATGTTTAGGCTCACACTGAAAGATAACTGGGTGATAAATTAGAATAATCTTACATTGGGGTTCCCGGTGACTGATGTTACATGTAAATCAACAACTGAAGGAGACatcaataaaatggaaaatgaactAATTTCCCCCCTTCATCTTCATTAAAAAGATACAGCTTTGTATCATTGTGTTTAGTATTAAATATAGAAAGCTTTCTTTTTGAgtatggatttatttgtttaaagcaaTCCCAACCCAAAGTTAGCAATGGATTTCCACCCGCATAGGGGATACTTGTTCAGGGGTTGTTTGTAATGCTCggttttctgaaataaattgtgGTTAATGCCCAATAAATTGCAGGGGCTGTTGCAGTCACAGTAGCTCATTCAGTGAAATCACAGGGACAGCGTGAGAAGAGGATGGAAGGGTATTCAAATACATtgtagtttttaaatgtgttgcacaCCAAGtttacatctatttaaaaagaaaaaaagtatttccacAGAAACTTTATACCCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141731 lncRNA upstream 81801 24076753 ~ 24288917 (+) False G113159
TU141732 lncRNA upstream 81801 24076753 ~ 24288917 (+) True G113159
TU141736 lncRNA upstream 113333 24076753 ~ 24257385 (+) False G113159
TU141646 lncRNA upstream 649086 23721382 ~ 23721632 (+) True G113090
TU141628 lncRNA upstream 773499 23580515 ~ 23597219 (+) True G113075
TU141814 lncRNA downstream 37222 24410057 ~ 24410304 (+) True G113233
TU141872 lncRNA downstream 300790 24673625 ~ 24676576 (+) True G113283
TU141921 lncRNA downstream 869730 25242565 ~ 25260402 (+) True G113319
TU141961 lncRNA downstream 1019020 25391855 ~ 25395392 (+) True G113357
TU141962 lncRNA downstream 1047823 25420658 ~ 25420875 (+) True G113358
AMCG00006885 mRNA upstream 23355 24337908 ~ 24347363 (+) True AMCG00006885
AMCG00006884 mRNA upstream 34838 24304696 ~ 24335880 (+) True AMCG00006884
AMCG00006878 mRNA upstream 334613 24032089 ~ 24036105 (+) True AMCG00006878
AMCG00006879 mRNA upstream 348075 24018072 ~ 24022643 (+) True AMCG00006879
AMCG00006874 mRNA upstream 449595 23904764 ~ 23921123 (+) True AMCG00006874
AMCG00006888 mRNA downstream 67596 24440431 ~ 24447563 (+) True AMCG00006888
AMCG00006892 mRNA downstream 107183 24480018 ~ 24502346 (+) True AMCG00006892
AMCG00006893 mRNA downstream 137213 24510048 ~ 24520705 (+) True AMCG00006893
AMCG00006894 mRNA downstream 277825 24650660 ~ 24653870 (+) True AMCG00006894
AMCG00006898 mRNA downstream 648295 25021130 ~ 25036473 (+) True AMCG00006898
TU141783 other upstream 34802 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 334606 24032113 ~ 24036112 (+) False AMCG00006878
TU141018 other upstream 3167517 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 3321680 21048336 ~ 21049038 (+) True G112567
TU140941 other upstream 3432548 20937497 ~ 20938170 (+) False AMCG00006811
TU141848 other downstream 136168 24509003 ~ 24587119 (+) False AMCG00006893
TU141973 other downstream 1245232 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 1442220 25815055 ~ 25832942 (+) True G113400

Expression Profile