RNA id: TU141872


Basic Information

Item Value
RNA id TU141872
length 2952
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G113283
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24673625 ~ 24676576 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTTTATCTCGTTTTCTTTAACAGTTGTATTACAATGAGATAATTCTTTGAGTGGTAAGAGATGGAGAATGaaacagcaaaaaaattaaaaataaaactgcagcaaGAACGACAGAAAGGATACAGATATTTGCCTAAGGTAGCACACATTGGCAGTACATAGATTGTTGTAAACATGCAGAAAACATGACGATTGCATTCCAAGAAACCTGGAGTGCTAACAAATTTCTATTTAATATGCTTCATTGTAAGAAATACTGAATGAAACTTCATGACAAAAACCTGCTACCCAAGAGGTTTATCAGTAACTTTTTTTGTAAGAAATAAATTCTTTACAGGGATTTATAAAagatatttgctttttaaaaataccccTCCAGAGACTAATTGAGTTTGGCCTCacaatattgttttgcatttttgaatttattttccgCAAGGGAGTAGGTACAAAGTGATACACTAGCCAGTGTCTGGACtgagaaaaataactaattaatcATTGcaatagtaaaaaaacaaacaaacaaacaaacaaacaaacaaacaaaaaaatatatatacattatgtatgATTTGTACTAAGGACTGAATAATATTTCTATTGTAACTGATATGGTTGGTAGGTGTGGTGTAGTAGGTAACAATGAGCTAAGCAATTATATGCTGTTCTACCTTCAGAACAGGAATTTAACATTTTGGAATAGGACTCAATAAGGCTGTTTTGCTAATTTCTGGCACTTTTACTCCTTTTCCTTTCTAACTGGAAATAAATATGGATACCTGGCATTAATAACATATTATAATGTCAGATGTGTAAATGATGATCCCAAGCTACTTCTAATTATTGCATTCTACTACAGTAATTCTAAATCTGTAACAGTCATATAAGAGAAGGGTTATTGGAATATATTTTCGGTTTATGTTTAAGATACAAAATTATGTTTACCGATTTATTCCACACcagagaatattttttttgacACTGGAATCTGCCAGTGTGGGGTGCCCATATTGCTGCAGTTTTCTATGGATAGGCACTGCTTCAAAGGCGCAGTACTTTGGAAGCGACAGAGCATGCACTCATAACACCAAGTCATGCAGACATTCTTGAACTCCATTCAGCAGGCGCTCCCTGACTAGCGACTAGATGTCTTGAGTGAATACACAATTCAACTGCTAACAAATTTActacaaaaaaaacctgaagcAATTTGTAAAGTCAACCAAATACAATCAAGCTTTATAATGTGGGTTTCATTAGTATAAACATGAGCTAAACTTCACCATGACACAGCTAAAGCCCAAAATGTTCCTTCAGTGTTCTAAAGctattctttttttctctcttccttttccTTATAATGGTACCAGGTTTGCTGTTGATTGGAAAAAATTGTTATACGCCACCCATTCCTGGTTACCTTTGATGTCTGTAAAAGGACACATCCTTAAATGAGGGCAGTTCCCTTCAGACTCCAAAAAAAGACCAAAACTTGCAATCTTTTCCTCTGCTCTCACTTGAAACTTCCTTGGCctgagtttcttttttaaactgtgtttttagaAGCAATGCATGTCTTTTTACTGAGGATTTTGatatttttcacagattttatCAGCATTGCTACAGTTAATTTGCTACAAAGTTAAGCTTTTGGTTGCATATTTTCAATCTCAACAGTGTTTGGGGAAGAAGAGAATACACTTGTTTTActagaaaataaacagataatgaGAACAACAGGAGGCGCAGCCAGCCAAAGAGTAGAACAGAAAGGAATGAAGCCCTGCACCAttctgacaaaaatatattttaaaatacttttgaacTACCTTGCCAAAAACCACAGACAATACATTCATGTAGACTAGAAATTAGTTATATGCCAAATGGAAAATGCTATAGTcccatctttttatttttcttcagtctaCTTTGAGTTTTGAATTCTTTATGTTTTGAGTTCATTtaaatcttaattatttttatatacactaTATGTAGTTAAGTTACATTAGAATGTGATGTTAGCTCTGGCACACAACACGTTATATATCTCATTGTAAAACGCATAAgattccctttctttttttctttctttttcagtgcaGTGGGTTAGCTTCAGAACACAGATgattacttttgattttaatattgtagtgcatcaaatgaaaactttgatgAATCTGTCAATCACGTTCACAATCACTGTCAATTCAATAGCTGTAGTGTTTGTCAGGCAGCACTAATATAAATTCAGAATTATTATTCAGCTAAAGATACATCTCTGAAGTCTGCATAAGCGGAAGGGTAGAATTCAGAGGTATAAAACCATTTCACTTgagtaaaacattatttaatgatGCTTGCACTGGTTAAATGTAAGAATTTGACCATATCAAAAATCATAATCAGCATTTTAAGCTGTGTCCCTTTGTAAATCTCTGTTTGAATCATCACACTATGACAGGCTAACTTTATATTTCCAGACCACATTTGTCCCTCAGAGGAAGAACAAAACCCAAGAAGAGTAACTACagtgtttcattaaaaatagaaaatgtactttacttttttcccctaatGTCTTTAGAAATTCAAGAGGAAGCTGCTAAATTCTCCAAGTAACCAGTGACACATATGGTATTCTGACAggtacaataaatatatatgtatgtcatctgtagaaaaaataaatacaatcaatatcAATCCTTATCTTCTGAAAATGCTTAAAAGTGAAACAATTGCTCCAGTCTGGCTTCCTTCAAAAATAGAACAGGTACATCCTGTACAGAACAATCTTACACAAATCCATACACAcatatagaaatatagaaaGGCATAAATCCATTGAAATTCAAGAATCAAGGTACACAAAATAGTCTATGTTAGATACTTCTATGTATACTAAGAAACTTACAGATAAACCCTTCGCCGATTGTCA

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141814 lncRNA upstream 263321 24410057 ~ 24410304 (+) True G113233
TU141805 lncRNA upstream 300790 24370718 ~ 24372835 (+) True G113224
TU141731 lncRNA upstream 384708 24076753 ~ 24288917 (+) False G113159
TU141732 lncRNA upstream 384708 24076753 ~ 24288917 (+) True G113159
TU141736 lncRNA upstream 416240 24076753 ~ 24257385 (+) False G113159
TU141921 lncRNA downstream 565989 25242565 ~ 25260402 (+) True G113319
TU141961 lncRNA downstream 715279 25391855 ~ 25395392 (+) True G113357
TU141962 lncRNA downstream 744082 25420658 ~ 25420875 (+) True G113358
TU141976 lncRNA downstream 1012159 25688735 ~ 25689111 (+) True G113372
TU141977 lncRNA downstream 1020621 25697197 ~ 25697408 (+) True G113373
AMCG00006894 mRNA upstream 19755 24650660 ~ 24653870 (+) True AMCG00006894
AMCG00006893 mRNA upstream 152920 24510048 ~ 24520705 (+) True AMCG00006893
AMCG00006892 mRNA upstream 171279 24480018 ~ 24502346 (+) True AMCG00006892
AMCG00006888 mRNA upstream 226062 24440431 ~ 24447563 (+) True AMCG00006888
AMCG00006885 mRNA upstream 326262 24337908 ~ 24347363 (+) True AMCG00006885
AMCG00006898 mRNA downstream 344554 25021130 ~ 25036473 (+) True AMCG00006898
AMCG00006899 mRNA downstream 364016 25040592 ~ 25041958 (+) True AMCG00006899
AMCG00006901 mRNA downstream 401811 25078387 ~ 25114339 (+) True AMCG00006901
AMCG00006903 mRNA downstream 479510 25156086 ~ 25214360 (+) True AMCG00006903
AMCG00006905 mRNA downstream 659769 25336345 ~ 25340058 (+) True AMCG00006905
TU141848 other upstream 86506 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 337709 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 637513 24032113 ~ 24036112 (+) False AMCG00006878
TU141018 other upstream 3470424 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 3624587 21048336 ~ 21049038 (+) True G112567
TU141973 other downstream 941491 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 1138479 25815055 ~ 25832942 (+) True G113400

Expression Profile