RNA id: TU141921


Basic Information

Item Value
RNA id TU141921
length 2771
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G113319
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25242565 ~ 25260402 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgactgtTTATTAGAAGAACAATACAGCAGATAAAAAGATCCTATTTCAATCACACACCCTTTCAGAGCTATACATTTGCTTCCATAACAATACATACtccccaaaagaaaaaaggaaaaaaaaaaaaatcaaaaccaaataGTTTCATTAAATGCTTCCATTTAGTGGCCGGTCATACTAACAAGGCCTCTTCTTTAACCATGGAAACCGAAACGATTGAAGCACCTGCTACCAGGAAAACGCTGgagacacgcacgcacacgcgcacacgcaaaacaaaacacaggatccTGACACAGTGATTAGCATTCACCCTATAAGGCAACTGGAGGGCCACTCTATTCCTGCTAGGCTTTGCAGgcctcaaaaaacaaacaatataccTCACTAGTGTCATGGTTTcatacaaaaactgaaaaactcaTAACtggtctaaaaaaaaaaaaaaaaagaatacaagaATCTGCTTCAGTTTCTGCTTCCCGTTTTATGAAAAGTGAAACAGCTGGTTACCAGATTAGGTTCCTCTCACTTtcatttctatacattttatacagaaatGCTTGTTAGAAGGTTAAATGTCCTGAAAGgttttgatattttcttggtGACAGATTCTGAGTAAGGaaaatttttaaaacaatgttcgGGGAGATCTCCATTCAACAATTAGAAGTGCGTTTTGGCTGTGAAAAATCCCTTTCTACAACACGTTTGGACAGTTTAAATGTCTTGCATTTCTGCCCTCATCAGCATTAGAAGAGTTCATGTCAGGGAACAAGGTTGGGGGATATGAATATAACTTAAATTTCGCTCTTCACCCTTTTGGAAGtaagtaattgaaaataaacagcctGGCAAGTAAGGCACATGGGGAAATATTCATTAAACACTCGTGCCAGTTCTGCAATGTTTAAACCACTTACAAATGATGAGAGAAGTCAAATTTAGGATCTTTCAAGCGATGCGCGTCAGGTGTTCTCCTATGGTTTTTGCCCAGGAGAAAGCATTCAGTGAATTTGGCCCACAGTGCAACCCAATGGGAGCAACCTCATTTTCTCCCTCGACtgtacagctgggtttttttggggggtagaGTTCTTCTGGGAATTCAAAATAATTCCTATGTCAAGTCCTGACCCCTTCTCTGCATATTCATCACTGAGGGTCTCTAATTTTAACTGCTTGACGAGGGAAAGGATAGGAAGGACATGGGAgaagttgaaaataaaacatctgaacAGACAATGCAACAAGGAATAATCACAGAATATGCTGTACAGACTACTattaatattacagtataaatataaattcttAATCTAAGAGCCGACATCTCTACATTTCTTCAGATTTTTTGGTGTCACCATACATACAATGTTTCCTCCAGTTCAGAATGTCCTGGCAATTAATTTAATGCACCCCCTTCCCACACCTCAACCAATTGTCCTTCGGTGCTCCTCAGTCACCAATTTAAAGAAAGGCTATGCTTTGGATCGATTCAGAGGAAACAACCTCCTTCCTTCGCCTGGTCTTAGTCAGTCCTTAAGGATCCTGCTGAACTGAGACCAGACATTACCTCTGCAGGTAAAGATATTTTAGTGTTGTAAGACTTCTGTTGTGCATGAGCTtggatttattaattttacttaaaCTGGAGAGGATAAGACAGCTGTGGGAACAGGGTCTCTGTGAGGGTAACAGTCCCTTTGGGGTCGAGAATCACACGGAGGTGTTGAGAGACTAGCCGACTTTAGCATCTCTCCTCCCAGGGTGCCATTCTCTCCGTCGTCAACATAACAGTGCAACCTTCCCCAGGGAAAGCAGTGACAGAAGCAGTGACAATCCCCCACCCCGAGCTCCCACCTTAACCGCTCAAAGCTTTACAATAGGACTGAACGGTCACAACCCACTTTCTTGCGAGTCTCAGTCGAGCCCATGACTGTTGCTCTAGAACATGTACAACAATGTTGGGTCACATCCGGTGCAatccaaatatataaatgggagacaaaacaaaagaaagtgaCAACAATCATTCACTGCGTGGACTTGGTTTGTATCCTCTAGGTTGGACGTACTATTACTGTTGGTATGTGATGGAAACCGACTGTTCAGTTCATAACACTGGGCTGGTTTATTAATAAGAGTCCTCTGAGTAAAGGATATTTAGTACCAGCACTTTTAAGTCAAAAATCTTGTCAAAGCTGcattaggggaaaaaaagtttacacagaacagacaaaacacaaaggGGGGCAAGCTTTCTGAATTTCTAATTTCAAAGTGGTTAGTAGACCTGAACGAAGAAGAAACTGCTTAAATCATGAAAGACTCAACATGAACCTTTGAGACCAGAGATGCATGCAAATGCAACAGGAATACTCTGTGTAGACCTATCTCCCTGCTCTGGTATCTGTAAATTACAGTGTCCGACATGAAAGAGGAGATCATAAGCACCTTGCATTTAGCTCCTGGTCCACTATGGTTACCTTTAACCACATTTAACTGTCGTTGACGGTACCTTGTATTTTGCTCTGGTATCTGTAAATCAATATTCCTAGCTAACAGACTCAGACTCCAGAACAcccttaaaaaacacacaaaacagatccACCGTCTCGGATTCACAGGCCTCcatcattcattatttattctggGAGTGCTGTATTTATACTGggctattaaaagaaaaatctctaagaaatgtaaaaaggcCACAGTGGCTATTTTGAGACCTACGCACAACGCTTTGAAAATCTATTTTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141872 lncRNA upstream 565989 24673625 ~ 24676576 (+) True G113283
TU141814 lncRNA upstream 832261 24410057 ~ 24410304 (+) True G113233
TU141805 lncRNA upstream 869730 24370718 ~ 24372835 (+) True G113224
TU141731 lncRNA upstream 953648 24076753 ~ 24288917 (+) False G113159
TU141961 lncRNA downstream 131453 25391855 ~ 25395392 (+) True G113357
TU141962 lncRNA downstream 160256 25420658 ~ 25420875 (+) True G113358
TU141976 lncRNA downstream 428333 25688735 ~ 25689111 (+) True G113372
TU141977 lncRNA downstream 436795 25697197 ~ 25697408 (+) True G113373
TU141987 lncRNA downstream 462479 25722881 ~ 25724671 (+) True G113383
AMCG00006903 mRNA upstream 28205 25156086 ~ 25214360 (+) True AMCG00006903
AMCG00006901 mRNA upstream 128226 25078387 ~ 25114339 (+) True AMCG00006901
AMCG00006899 mRNA upstream 200607 25040592 ~ 25041958 (+) True AMCG00006899
AMCG00006898 mRNA upstream 206092 25021130 ~ 25036473 (+) True AMCG00006898
AMCG00006894 mRNA upstream 588695 24650660 ~ 24653870 (+) True AMCG00006894
AMCG00006905 mRNA downstream 75943 25336345 ~ 25340058 (+) True AMCG00006905
AMCG00006910 mRNA downstream 455425 25715827 ~ 25721613 (+) True AMCG00006910
AMCG00006916 mRNA downstream 550161 25810563 ~ 25822470 (+) True AMCG00006916
AMCG00006912 mRNA downstream 569072 25829474 ~ 25836610 (+) True AMCG00006912
AMCG00006911 mRNA downstream 591003 25851405 ~ 25861865 (+) True AMCG00006911
TU141848 other upstream 655446 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 906649 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 1206453 24032113 ~ 24036112 (+) False AMCG00006878
TU141018 other upstream 4039364 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 4193527 21048336 ~ 21049038 (+) True G112567
TU141973 other downstream 357665 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 554653 25815055 ~ 25832942 (+) True G113400

Expression Profile