RNA id: TU141961


Basic Information

Item Value
RNA id TU141961
length 3538
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G113357
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25391855 ~ 25395392 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagatgGATAAAAGGCAGTACATTTGTTAAACTTGtaaataacaaagacaaaaaaaattataatttgtaaattcTCTATGAAATATGGGAGAACCCAAACCGTGACTGTGTTCCtgaatgcaatataaaaaagtatattcCTATAAAGTATGGACCCGTAAAATTGAGAAGGCAGGATTGCTGGCAAAGATCATCACATAGTTTGAAGGCAAGGAAGAGTAATAAAAAGGTGAAGTGCCTGGGGACCATCAGTCTAAACTCCTAGTCATAACCCGGCTGACTACAAGTCATAAGGACCTTTTAAAAAAGAACTTAGTCTCAAAGGGTTAACATCTCACATacataacagaaaatgcataataacaggtgtgtgtgtgtgtaatacataACTGATCTTTATCTGAGATTACTGTTCAGCTATGGTTTAGACTGGCCACATCCTTTTTTGCCTCTGCTGgtaaatactttatatatactgtTGATCATGTGGGGACACCTCAAGATGATGGGCTAAAATTGAAATCCAAGTTTTGGTCTCTGCAAGAACTTCCAAACCATCAAACGGAATTTGGAAACCCAATTGAAAAGGTAATGTCCTTTGACAGTCAAGTTCTCCCGTGTGTGTCCTTTTGACCATCCTTCCCCTCTTAGCCTTGCCTGTCATACAGCACTGGTACTTGTGGACTGGCTTGTGGACTTGATGGTACCCAGTCTGTCCAGTAAGCCTTCTGACAGTGTTTTAGAAAAACTGAAGACACTAACTCTGGCACATTTTAGCACAGATTCAGATTCCTTGGCACTGAAGGACTGGTGACTAAAGCAACATCTAGAGTCAGTAAAACAACTTTCATCAGCAGATTAACAGTGACCTAACAAGGAGgctaattaattatttaccttttattaataattattctgGTACGTTTTGCTAGTAGCAACACATCCGTCAAACTAAGTATTGCAGGTCAGTACTTTGTTTCTAGCAGGGACTGTGAGATTTTCAACAGAGAAAGTACAATTGCACATTTTACTATCAACTGTTTTAAAAGAGCCACTGACGGACCACAGTCTATGCTAGCTactaaaatgtaacttttcaatggttgtttccatttttttcctttgtcctAACATTCTAGCACTCTGGTGAAGAAGTGACATGTTAATGTGATGTGAGACAGCAATGTTAGGGATATATCTGGACCTGAAGATGGACTGCATATGCAAAGGAAACACTGATGCATGAAAACAGTCATTGAAAGCCACAATTCACAATAATATAGATTGTTTTATCTTTATAGCCCATTGTTCCTTTATTACTCTAAATGTAACTACATGATATACAACATGGACATGAAGAATGTACTGCGGATAAACAATTTTGTGGATAACATAACTAtgaatacttgtttttttatacatgGTGAAAATTATACTTAATATGtgaagattaaaacaaaatagaaaaagcaaacaaaaagcttaaattaatacacaaattGTATGTCTTTGCAATTGACATGGGAAAACGTTTGCAATGCATTAGAATCATTCAttctctcatttttttttaccagcaaTCCAAACAGCATGGTATCACAGTCTGTAAGAAAAAGGTCTTGGTGTTTAAACCTAGAAGAACCTAGTCTAGGTTGGAGCTCTCCCCTCAGATAACAGacacaaatgttattttcagatAGGCTGATATAAAACACGTTGTAGTTTCAATATCGCAGTCTCAGACTCACACAGACATTATCAACAggctgcaaaagaaaaatatatatattcgaagaaataaaaaatatcgaGATACCAAGTACGGAATTACAGTACTTTTCAAACACGtggtatattttcaaaatctttgCGTTTACACCTTATTTtgacacaccaaaaaaaaacaaaaaaaaaaaacacatttattgttttatggttttaaaaagaCTCAGGGGTAGCCATTTTGTtcagaaggatttttttttttgtccttcccCATTGACATTCTGTGCAAAACGTTATATTTAActatatctatgtatttatatataaatatgtatatgtgtatatatttattaaaacacccCTGTCTGGTAGTACTTGCAGTGCTGCAGATCTCATTTGTTGCCTTCATCCTGAATTTTGtgacaaacaagcaaaacaactgaatgaaaataaaccagGAATCAGCACATGCACAACCAGAGAGGTCAGATGTATGTCCATCAAAACACATGTCCGTCTTACACATTTACAACATCATGGAGTCATTCACGCATTTGCTTTTCCTCACATTCTTGCAGTTTGAAGACACCTTGAAGCTGTACAGATAATGAACGCAAGTCAATCCTATTTGCAGAGTTTAAGTTTACTTTTTTAGTTTCCCCACCCccgaataaaattaaaaacaaaacacaaaaatcatctTCATGCTTCGGGATGGAGGCAGTGGCAGTGTATACCGTATCCAACgtgacattttgattttgaatagcACCAGAGAGCAGCATTTAAACCTTAATCCTTAAAGTTACTTAACCTGTTTGAAATAGTTAGGATGCTAAAAGAAACCTCTTAACGGATCGTATACCCTATTTGTTTCCCACTCGAAGAAAACACTGAGTcaatgaaatatacagttaatacaacaCTGTCTTCCCTTACACTGCACCAAGAGCAGTCATGTAAGAAACTGCAGGACGTGTGAAACATCTCCATGTTCAACGTTGAAacattagtttttgttttgtaacaaagcattacaatttcaaactcaacttatttaatttgagtCAGTGTATAGTCTATAGCCTAAATGTATATCACAACCTTTCTTAAACTAGTTTTAACTCATTTGCATACAACAAGATCTTTCCTCATCTCACCACAATACCaaatagcatttattttgtcaggCACACTATCTTTCACACATCAGCTTCAGCAGTGCTAACAGGCTATTATTCTGACATTTACAAGACATACAGTAGAAGTTTGATCAGTCcctcactgcacacacagtaTGACCCAATTTCGTTTTATCCAGAAATACAAACTCGCTCAAGGCATGGAAATTTCtagtattttttcaaaattaagaaTCACACAGAAGCTCACACTTACTGGTTGTTCAGTTGTACTTCTGCTTAAAGTCACCATTATATTCCATATTTTAGTTTGCCTGTGAAACCTCCAGAAATAAATTGCTGAGCCACTTCTGCCAGTTTGGCTCCAGATTGGGACATACTGTGGCCCTTCCATCCCAAATGGACAGTTCTCTCCACAATAAAGCCAAGcattgtgttttctcttcaaTGTAAATGCTCACAAAATTGAATgtgacaaagaaaaaatgtcagttttactTGCTAATATTAGCTTTAATATTTCACTAAAATAGGTTTTCTTTAGTACCAATTTACTGTGaaacaaaaagtacattatGCTTCCAGCTCCTAACAAATGCACAACTTTGAAGCACTTGCCTGGGGAATTCCACATCAGGACAACAGGAATTTGCACTGTGGTGGACACCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141921 lncRNA upstream 131453 25242565 ~ 25260402 (+) True G113319
TU141872 lncRNA upstream 715279 24673625 ~ 24676576 (+) True G113283
TU141814 lncRNA upstream 981551 24410057 ~ 24410304 (+) True G113233
TU141805 lncRNA upstream 1019020 24370718 ~ 24372835 (+) True G113224
TU141732 lncRNA upstream 1102938 24076753 ~ 24288917 (+) True G113159
TU141962 lncRNA downstream 25266 25420658 ~ 25420875 (+) True G113358
TU141976 lncRNA downstream 293343 25688735 ~ 25689111 (+) True G113372
TU141977 lncRNA downstream 301805 25697197 ~ 25697408 (+) True G113373
TU141987 lncRNA downstream 327489 25722881 ~ 25724671 (+) True G113383
TU141999 lncRNA downstream 345591 25740983 ~ 25745859 (+) True G113394
AMCG00006905 mRNA upstream 51797 25336345 ~ 25340058 (+) True AMCG00006905
AMCG00006903 mRNA upstream 177495 25156086 ~ 25214360 (+) True AMCG00006903
AMCG00006901 mRNA upstream 277516 25078387 ~ 25114339 (+) True AMCG00006901
AMCG00006899 mRNA upstream 349897 25040592 ~ 25041958 (+) True AMCG00006899
AMCG00006898 mRNA upstream 355382 25021130 ~ 25036473 (+) True AMCG00006898
AMCG00006910 mRNA downstream 320435 25715827 ~ 25721613 (+) True AMCG00006910
AMCG00006916 mRNA downstream 415171 25810563 ~ 25822470 (+) True AMCG00006916
AMCG00006912 mRNA downstream 434082 25829474 ~ 25836610 (+) True AMCG00006912
AMCG00006911 mRNA downstream 456013 25851405 ~ 25861865 (+) True AMCG00006911
AMCG00006917 mRNA downstream 516963 25912355 ~ 25937570 (+) True AMCG00006917
TU141848 other upstream 804736 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 1055939 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 1355743 24032113 ~ 24036112 (+) False AMCG00006878
TU141018 other upstream 4188654 21142865 ~ 21203201 (+) True G112600
TU140974 other upstream 4342817 21048336 ~ 21049038 (+) True G112567
TU141973 other downstream 222675 25618067 ~ 25618445 (+) True G113369
TU142014 other downstream 419663 25815055 ~ 25832942 (+) True G113400

Expression Profile