RNA id: TU141987


Basic Information

Item Value
RNA id TU141987
length 1791
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G113383
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25722881 ~ 25724671 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctaaaatgtcaGATACTGAAATGatccttgaaaaataaaacatttacagaatcCATTTGTTCATTTGAAACTTAACAAAAAAGGGCAGGATAGGGCAGGGCCGGCCTGTGGCATAAgcggaataggcaaatgctaggggcgCCCAAATGAGTgaagattcttttttttttttttttttactaataccGTTTTAATTCTATTAATTCGAAATATTACCCAAAAAAGCGAAAGCCCACACAACAACATAACTACAGCTTATTAGGCCATATGTTCCGTGTTGCCGCAGCGTCACCCCGGCCGGCCCATCAATCCCCCCGCTCTCATAGTCAGACTGACCTGCCTGTGGGGGGCGAGTTCAGTATCTGAAGCAGTGAGTGACACTGAACAGGAAACATGATCAATTAGCTTCAGTAGCCACTTCAAACCATGTCAAAAAGACCAAAGCCCTCTGGTGTCCTGGGAAGAAAAAGATGAGGAGGACAAACGGGATAAGGACAGAGGTGATGTGATGAAAGAATAGTTTATCTAATTGCATAGTTACCGTTGGAGCAGCGTTACTACTAGCTTACTTTGGACGATACTAGTAACGTCGCTCATTTAAATAGCTGGCTACAGTCATTGTCAGTTACTTTTACCTTAAATTAATTAGGGAATGTTGGAAAGACTACTCATGTGTTTGGGGAATAACCTGACCTGTAATGTTTTGAAGGGCAGTGGAAATGGCTTTTGTAATGACTCGCTTAACTTTACGTTTTTGCTCCACTGCCCGGTCCCTTAACAATTAGCCAATCAGAGCGCCGAACTGCCACGCCTGGAGATAATACACTTCCTGAGGTTTGAAAATAAGTTTACCCTGGCGATTTATGTTAAGTTAAGTTATAGTTAGGGTCTACAAAACGGAgagtaattgtttattattatatgattgtGTGCGGGCAGcacaatgtaaatgtttgtttgtttggtagAAGTTATTTGTGCTACATATTGAGAATAGCGATGCCAATCTGTTAACCAGCCGAGTCATTATCTACTGCGTCACCATGCGGTCGTAATGCGAACTGcattgatttataatatattatttattaccgTTATCTATTGTTTACATGCTTATTGAATTGAAGACAGTGTATTATCGATATGTATAACGGTTATAAGTTTATAAGATATAACCTTGGTTAAGGTCATTTCTCAGCATCTAGCTGTAGTAAGATAGCATAGATCCATAGGTTTGCATTTATGCTGCATGTAAAGTCATTTGTGTATATTAGCTCTGCTGTCAgaactgtgtatatttatattattattcttaacaTGATTATTggttatattgattattatacGACTGATATAcgttattgttatttctttgtagaaccatacatacatattcatcaaacttaatattacaattactgaaGACACCGTTTTGGATACAGTGCTAGTGATGCAATAAAGGGACACGGTTTGTAACTAATGAGAATTGTGCATTCTTACCGAAGCCCCACACCGATCACACCTTTTGAACGATCAGCTCTTTAACTCTTTCATCCAACTCCGTTACCTATAAcataattttgagaaatacaccttttctttcaagtgtgctgcaggaaccatccacttatttataattcgTTTTATGTCATTTGTTTGCTGCAAGGCAAAGGCAAGGCGAGTAAGGCTGTAGAACAATGctatattattcatattgcactaaggtgtctaatatagttttgttCGTTcaatactcttatttatattatatttataatttgttttatgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141977 lncRNA upstream 25473 25697197 ~ 25697408 (+) True G113373
TU141976 lncRNA upstream 33770 25688735 ~ 25689111 (+) True G113372
TU141962 lncRNA upstream 302006 25420658 ~ 25420875 (+) True G113358
TU141961 lncRNA upstream 327489 25391855 ~ 25395392 (+) True G113357
TU141921 lncRNA upstream 462479 25242565 ~ 25260402 (+) True G113319
TU141999 lncRNA downstream 16312 25740983 ~ 25745859 (+) True G113394
TU142028 lncRNA downstream 167986 25892657 ~ 25894634 (+) True G113409
TU142098 lncRNA downstream 270973 25995644 ~ 25995909 (+) True G113467
TU142100 lncRNA downstream 271376 25996047 ~ 25996264 (+) True G113469
TU142180 lncRNA downstream 830016 26554687 ~ 26554909 (+) True G113534
AMCG00006910 mRNA upstream 1268 25715827 ~ 25721613 (+) True AMCG00006910
AMCG00006905 mRNA upstream 382823 25336345 ~ 25340058 (+) True AMCG00006905
AMCG00006903 mRNA upstream 508521 25156086 ~ 25214360 (+) True AMCG00006903
AMCG00006901 mRNA upstream 608542 25078387 ~ 25114339 (+) True AMCG00006901
AMCG00006899 mRNA upstream 680923 25040592 ~ 25041958 (+) True AMCG00006899
AMCG00006916 mRNA downstream 85892 25810563 ~ 25822470 (+) True AMCG00006916
AMCG00006912 mRNA downstream 104803 25829474 ~ 25836610 (+) True AMCG00006912
AMCG00006911 mRNA downstream 126734 25851405 ~ 25861865 (+) True AMCG00006911
AMCG00006917 mRNA downstream 187684 25912355 ~ 25937570 (+) True AMCG00006917
AMCG00006921 mRNA downstream 225015 25949686 ~ 25972112 (+) True AMCG00006921
TU141973 other upstream 104436 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 1135762 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 1386965 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 1686769 24032113 ~ 24036112 (+) False AMCG00006878
TU141018 other upstream 4519680 21142865 ~ 21203201 (+) True G112600
TU142014 other downstream 90384 25815055 ~ 25832942 (+) True G113400

Expression Profile