RNA id: TU142014



Basic Information


Item Value
RNA id TU142014
length 819
RNA type TUCP
GC content 0.51
exon number 7
gene id G113400
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25815055 ~ 25832942 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACGCATGCaatcgttttttattttgcttaacaATAGCTATGTGTGGTAACACTTCAGAATATTTTATGCCACAAGGATGTCAAACACTTGACTTTATTCAGGTTGCTTGAGTGGAGAAAGTCATGGGCTTAGTCAGTCAGCATCAACATCAACACCAGGGAGGACTGTAAAAGGTGCTGCAGCAGTGGAAGCAGACTTTCTAAACGTTTTCAGGTGCCTTCCTACCTAAGATTAATATGGCAGACCAAAACAGTCTGCCCGCAAAGCTGATTAACGGAGGAGTGGCAGGGCTGGTGGGGGTGACGTGTGTGTTTCCCATTGACTTGGCAAAGACCAGGCTTCAGAACCAGCAAGGTCCCCGCCTCTACACTGGCATGTTGGATTGTCTGATTAAAACTGTTCGGTCTGAAGGCTATTTTGGAATGTATCGAGGTGCTGCAGTTAACCTTACTTTAGTGACCCCAGAAAAAGCTATCAAGCTAGCTGCCAATGATGTCTTCAGACAACAGCTCTCCAAGGATGGCAAAGGCCTCACACTATACAAGGAGATGTTAGCAGGTTGTGGAGCTGGTACCTGCCAGGTCATTGTGACTACACCCATGGAAATGCTCAAAATCCAGCTCCAGGATGCAGGGAGACTTGCTGCCCAGAGGCCTGTGCCGGCTGAAAGTATTGCCACTTCCCTGCAGGCTCCCCAGCCCACTGGCAGCCCCCCCCCTGCTCCCCAGCGCCCTTCCGCCACCCAAATCACCAAACAGCTGCTGCGGACCTGCGGGGTGGCCGGTCTCTACAGGGGAATGGGTGCCACCCTGTTCAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU141999 lncRNA upstream 69196 25740983 ~ 25745859 (+) True G113394
TU141987 lncRNA upstream 90384 25722881 ~ 25724671 (+) True G113383
TU141977 lncRNA upstream 117647 25697197 ~ 25697408 (+) True G113373
TU141976 lncRNA upstream 125944 25688735 ~ 25689111 (+) True G113372
TU141962 lncRNA upstream 394180 25420658 ~ 25420875 (+) True G113358
TU142028 lncRNA downstream 59715 25892657 ~ 25894634 (+) True G113409
TU142098 lncRNA downstream 162702 25995644 ~ 25995909 (+) True G113467
TU142100 lncRNA downstream 163105 25996047 ~ 25996264 (+) True G113469
TU142180 lncRNA downstream 721745 26554687 ~ 26554909 (+) True G113534
TU142183 lncRNA downstream 774717 26607659 ~ 26640179 (+) True G113537
AMCG00006910 mRNA upstream 93442 25715827 ~ 25721613 (+) True AMCG00006910
AMCG00006905 mRNA upstream 474997 25336345 ~ 25340058 (+) True AMCG00006905
AMCG00006903 mRNA upstream 600695 25156086 ~ 25214360 (+) True AMCG00006903
AMCG00006901 mRNA upstream 700716 25078387 ~ 25114339 (+) True AMCG00006901
AMCG00006899 mRNA upstream 773097 25040592 ~ 25041958 (+) True AMCG00006899
AMCG00006911 mRNA downstream 18463 25851405 ~ 25861865 (+) True AMCG00006911
AMCG00006917 mRNA downstream 79413 25912355 ~ 25937570 (+) True AMCG00006917
AMCG00006921 mRNA downstream 116744 25949686 ~ 25972112 (+) True AMCG00006921
AMCG00006927 mRNA downstream 363375 26196317 ~ 26203741 (+) True AMCG00006927
AMCG00006928 mRNA downstream 401910 26234852 ~ 26260252 (+) True AMCG00006928
TU141973 other upstream 196610 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 1227936 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 1479139 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 1778943 24032113 ~ 24036112 (+) False AMCG00006878
TU141018 other upstream 4611854 21142865 ~ 21203201 (+) True G112600

Expression Profile