RNA id: TU142028



Basic Information


Item Value
RNA id TU142028
length 909
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G113409
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25892657 ~ 25894634 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCAGTCGCTCAACGTCTCCACTTCACCGCAGAACCGGTCCAATCCCGGGTCCCATACAGGAGGAGAAAAGAGGGTTATTGAGCAAAAGagccgctccttctcatccctggccactaagtggtggaacgaccttcccaccaaagtcaaaacagcagagtccttgacctccttccggcgcttactcaagacacatcttttcagacagtacttgtaatttagtcatttactctcctgtaagatagcacttatacaacatttatcatactacttgcattactagtacttgtgttgtttattttgatgtccCCTATGTTTCCTTCCCCTGGGCCTTGACTGTgatctaacatcttgtctgcacttatcatcttttacagtccaggatgtaagacctcatatattgtgtaaattggaatttggaaaGTGTATAgcgctttgaattgcactgtattatgtgaattggaatttgtaatatgttatgccttgtactgcactgtatttttgcactttgtattgtgcttatattttgtaaatcgccctagataagggtgtctgctaagaaataaataataataaataattataatagagGAAGAGATTGATAGGGTGTACactacattataaaatgtaaatatctgcaTGTACATAGATGCATGTAGGATACCCTGTGCCATTTCTTTGTAATATGAAAATCTTGGTGTCTGTCATTTCTGTTTAGATCCTACCAAGTTCTAGCAATCCCTTAGGGTCGACATGTTCAGCTCAtgaaggggggggggttgtctCTAACTGTTCGGAAAATGTAGTTAGTGCCATAGACTTCTACAGGCCACCATACAGCCAAAATTAGTATCCATAGCCTTAGGTGAAGTGTAAAAATTGTTTTAACAAGAACAACAGGTGtactttaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU141999 lncRNA upstream 146798 25740983 ~ 25745859 (+) True G113394
TU141987 lncRNA upstream 167986 25722881 ~ 25724671 (+) True G113383
TU141977 lncRNA upstream 195249 25697197 ~ 25697408 (+) True G113373
TU141976 lncRNA upstream 203546 25688735 ~ 25689111 (+) True G113372
TU141962 lncRNA upstream 471782 25420658 ~ 25420875 (+) True G113358
TU142098 lncRNA downstream 101010 25995644 ~ 25995909 (+) True G113467
TU142100 lncRNA downstream 101413 25996047 ~ 25996264 (+) True G113469
TU142180 lncRNA downstream 660053 26554687 ~ 26554909 (+) True G113534
TU142183 lncRNA downstream 713025 26607659 ~ 26640179 (+) True G113537
TU142196 lncRNA downstream 750122 26644756 ~ 26645011 (+) True G113541
AMCG00006911 mRNA upstream 30792 25851405 ~ 25861865 (+) True AMCG00006911
AMCG00006912 mRNA upstream 56047 25829474 ~ 25836610 (+) True AMCG00006912
AMCG00006916 mRNA upstream 70187 25810563 ~ 25822470 (+) True AMCG00006916
AMCG00006910 mRNA upstream 171044 25715827 ~ 25721613 (+) True AMCG00006910
AMCG00006905 mRNA upstream 552599 25336345 ~ 25340058 (+) True AMCG00006905
AMCG00006917 mRNA downstream 17721 25912355 ~ 25937570 (+) True AMCG00006917
AMCG00006921 mRNA downstream 55052 25949686 ~ 25972112 (+) True AMCG00006921
AMCG00006927 mRNA downstream 301683 26196317 ~ 26203741 (+) True AMCG00006927
AMCG00006928 mRNA downstream 340218 26234852 ~ 26260252 (+) True AMCG00006928
AMCG00006930 mRNA downstream 810146 26704780 ~ 26706164 (+) True AMCG00006930
TU142014 other upstream 59715 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 274212 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 1305538 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 1556741 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 1856545 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile