RNA id: TU142099


Basic Information

Item Value
RNA id TU142099
length 289
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G113468
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25995641 ~ 25995929 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctacacagccccatacacaacaaaactgtgatgcactgtgtgttctgacacctttctatcagaaccagcattaactttttcagcaatttgagctacagtagctcctctgttggattggaccacacgggccagccttcgctccccacgtgcatcaatgagccttggccgcccatgaccctgtcgccgattcaccgcttttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142052 lncRNA downstream 128362 25866385 ~ 25867279 (-) True G113431
TU142000 lncRNA downstream 249656 25741068 ~ 25745985 (-) True G113395
TU142003 lncRNA downstream 250151 25741068 ~ 25745490 (-) False G113395
TU141998 lncRNA downstream 256774 25738554 ~ 25738867 (-) True G113393
TU141995 lncRNA downstream 276066 25719362 ~ 25719575 (-) True G113391
TU142110 lncRNA upstream 5517 26001446 ~ 26038323 (-) True G113479
TU142114 lncRNA upstream 5517 26001446 ~ 26010499 (-) False G113479
TU142233 lncRNA upstream 1063440 27059369 ~ 27059594 (-) True G113573
TU142246 lncRNA upstream 1159606 27155535 ~ 27155857 (-) True G113586
TU142247 lncRNA upstream 1169250 27165179 ~ 27165398 (-) True G113587
AMCG00006922 mRNA downstream 2536 25976490 ~ 25993105 (-) True AMCG00006922
AMCG00006918 mRNA downstream 46514 25937707 ~ 25949127 (-) True AMCG00006918
AMCG00006919 mRNA downstream 84059 25899551 ~ 25911582 (-) True AMCG00006919
AMCG00006920 mRNA downstream 102561 25888257 ~ 25893080 (-) True AMCG00006920
AMCG00006915 mRNA downstream 148156 25838755 ~ 25847485 (-) True AMCG00006915
AMCG00006923 mRNA upstream 96968 26092897 ~ 26105386 (-) True AMCG00006923
AMCG00006925 mRNA upstream 138242 26134171 ~ 26140819 (-) True AMCG00006925
AMCG00006924 mRNA upstream 188322 26184251 ~ 26185762 (-) True AMCG00006924
AMCG00006926 mRNA upstream 196460 26192389 ~ 26361451 (-) True AMCG00006926
AMCG00006929 mRNA upstream 612614 26608543 ~ 26639948 (-) True AMCG00006929
TU141596 other downstream 2588434 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 5045805 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 5759435 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 6359716 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 7654431 18339270 ~ 18341210 (-) False AMCG00006754
TU142176 other upstream 504086 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 1406671 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 2271333 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 2295526 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 2715290 28711219 ~ 28812548 (-) True G113833

Expression Profile