RNA id: TU142110


Basic Information

Item Value
RNA id TU142110
length 614
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G113479
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 26001446 ~ 26038323 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAGCGAGCACAATAGCagcaattgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtcctAGGCAGCAGCTCAAGCAGCAGCAGAGGCCGCCTGAGAGTTTGCCAATGGCTGGAGTGGACGTGGTTTGTGCAGAGGCTGCCATATGCTCCTGCTCTGTAGGAATGTGATTACCCTCACAGTGCCGAGGGCTGCTGCAAGCAAGAGGGAGCAGCGCATGCTGGGCTGAGTTGTTCGCACTGGGATTGGGCTAATGGAAGGCCTGGGAGCTTTTGGCTGAGGGAGCAACATCAAGCATTTAGCAAAAAAGCAGTGTGTCTTGCTGGGGCTTGTCTGAGaaaagaaaGGTAAACAGAACTGTTTCTCGTCCCATAAATCAGATGAAGGAGCCTGTGTGGGACTGAAAATCGCAAAAGCAAAAGccaCTGGCAGCTGTTGTAGTCCAAAGCTTTCATCACTTCACCAGAGATCAGGTCCCACAAGTCCATCACCCGCAGGGGGCTGGGCATCCCAGGCACCAGGCAGTGAAGATGCTctggaaataaatggaaaaagacCAACCAGGAATACAGTTCCCTTCAGCCACAAACCAAAGCCTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142099 lncRNA downstream 5517 25995641 ~ 25995929 (-) True G113468
TU142052 lncRNA downstream 134167 25866385 ~ 25867279 (-) True G113431
TU142000 lncRNA downstream 255461 25741068 ~ 25745985 (-) True G113395
TU142003 lncRNA downstream 255956 25741068 ~ 25745490 (-) False G113395
TU141998 lncRNA downstream 262579 25738554 ~ 25738867 (-) True G113393
TU142233 lncRNA upstream 1021046 27059369 ~ 27059594 (-) True G113573
TU142246 lncRNA upstream 1117212 27155535 ~ 27155857 (-) True G113586
TU142247 lncRNA upstream 1126856 27165179 ~ 27165398 (-) True G113587
TU142308 lncRNA upstream 1232136 27270459 ~ 27363030 (-) True G113631
TU142352 lncRNA upstream 1761615 27799938 ~ 27800294 (-) True G113667
AMCG00006922 mRNA downstream 8341 25976490 ~ 25993105 (-) True AMCG00006922
AMCG00006918 mRNA downstream 52319 25937707 ~ 25949127 (-) True AMCG00006918
AMCG00006919 mRNA downstream 89864 25899551 ~ 25911582 (-) True AMCG00006919
AMCG00006920 mRNA downstream 108366 25888257 ~ 25893080 (-) True AMCG00006920
AMCG00006915 mRNA downstream 153961 25838755 ~ 25847485 (-) True AMCG00006915
AMCG00006923 mRNA upstream 54574 26092897 ~ 26105386 (-) True AMCG00006923
AMCG00006925 mRNA upstream 95848 26134171 ~ 26140819 (-) True AMCG00006925
AMCG00006924 mRNA upstream 145928 26184251 ~ 26185762 (-) True AMCG00006924
AMCG00006926 mRNA upstream 154066 26192389 ~ 26361451 (-) True AMCG00006926
AMCG00006929 mRNA upstream 570220 26608543 ~ 26639948 (-) True AMCG00006929
TU141596 other downstream 2594239 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 5051610 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 5765240 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 6365521 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 7660236 18339270 ~ 18341210 (-) False AMCG00006754
TU142176 other upstream 461692 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 1364277 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 2228939 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 2253132 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 2672896 28711219 ~ 28812548 (-) True G113833

Expression Profile