RNA id: TU142176


Basic Information

Item Value
RNA id TU142176
length 350
RNA type TUCP
GC content 0.53
exon number 3
gene id G113530
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 26500015 ~ 26500681 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGACAGAACAGGTCTGCGGTAACTAGTGGAAACCCCCATAGCGCACTATGGCTACACCTGCTAAGAAGACACCCCCTAGCGACCACGCTGCTGATGAAGATGCGGGGGCAACTAACACAAAATTAAGACGGATGGAAGACATGGACCCAAAagagACATGTGTAGGAATACCTCCCCTGAGCCCTGGTGAAGCTGCCCAGAtgtctgatgaagatgaaggcGTTAGCACTGTTGATGAAGATGCAGGTGTGTCTAACACAAAATCAAGACGGACGGAAGACAGGGACCCAAAagagAGTGGTGTCAGCCCTCCTCCACCGAGCCCCAGGGACGCTCTCCCAATGTCTGA

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142110 lncRNA downstream 461692 26001446 ~ 26038323 (-) True G113479
TU142114 lncRNA downstream 489516 26001446 ~ 26010499 (-) False G113479
TU142099 lncRNA downstream 504086 25995641 ~ 25995929 (-) True G113468
TU142052 lncRNA downstream 632736 25866385 ~ 25867279 (-) True G113431
TU142000 lncRNA downstream 754030 25741068 ~ 25745985 (-) True G113395
TU142233 lncRNA upstream 558688 27059369 ~ 27059594 (-) True G113573
TU142246 lncRNA upstream 654854 27155535 ~ 27155857 (-) True G113586
TU142247 lncRNA upstream 664498 27165179 ~ 27165398 (-) True G113587
TU142308 lncRNA upstream 769778 27270459 ~ 27363030 (-) True G113631
TU142352 lncRNA upstream 1299257 27799938 ~ 27800294 (-) True G113667
AMCG00006926 mRNA downstream 138564 26192389 ~ 26361451 (-) True AMCG00006926
AMCG00006924 mRNA downstream 314253 26184251 ~ 26185762 (-) True AMCG00006924
AMCG00006925 mRNA downstream 359196 26134171 ~ 26140819 (-) True AMCG00006925
AMCG00006923 mRNA downstream 394629 26092897 ~ 26105386 (-) True AMCG00006923
AMCG00006922 mRNA downstream 506910 25976490 ~ 25993105 (-) True AMCG00006922
AMCG00006929 mRNA upstream 107862 26608543 ~ 26639948 (-) True AMCG00006929
AMCG00006932 mRNA upstream 808211 27308892 ~ 27309170 (-) True AMCG00006932
AMCG00006935 mRNA upstream 1136539 27637220 ~ 27649919 (-) True AMCG00006935
AMCG00006934 mRNA upstream 1168105 27668786 ~ 27677200 (-) True AMCG00006934
AMCG00006938 mRNA upstream 1304802 27805483 ~ 27824074 (-) True AMCG00006938
TU141596 other downstream 3092808 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 5550179 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 6263809 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 6864090 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 8158805 18339270 ~ 18341210 (-) False AMCG00006754
TU142323 other upstream 901919 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 1766581 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 1790774 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 2210538 28711219 ~ 28812548 (-) True G113833

Expression Profile