RNA id: TU142180



Basic Information


Item Value
RNA id TU142180
length 223
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G113534
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 26554687 ~ 26554909 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctgacagttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgatagcttctgtggacaggtgtcttttatacaggt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142100 lncRNA upstream 558423 25996047 ~ 25996264 (+) True G113469
TU142098 lncRNA upstream 558778 25995644 ~ 25995909 (+) True G113467
TU142028 lncRNA upstream 660053 25892657 ~ 25894634 (+) True G113409
TU141999 lncRNA upstream 808828 25740983 ~ 25745859 (+) True G113394
TU141987 lncRNA upstream 830016 25722881 ~ 25724671 (+) True G113383
TU142183 lncRNA downstream 52750 26607659 ~ 26640179 (+) True G113537
TU142196 lncRNA downstream 89847 26644756 ~ 26645011 (+) True G113541
TU142198 lncRNA downstream 95842 26650751 ~ 26651028 (+) True G113543
TU142201 lncRNA downstream 150327 26705236 ~ 26705468 (+) True G113546
TU142211 lncRNA downstream 257824 26812733 ~ 26813221 (+) True G113551
AMCG00006928 mRNA upstream 294435 26234852 ~ 26260252 (+) True AMCG00006928
AMCG00006927 mRNA upstream 350946 26196317 ~ 26203741 (+) True AMCG00006927
AMCG00006921 mRNA upstream 582575 25949686 ~ 25972112 (+) True AMCG00006921
AMCG00006917 mRNA upstream 617117 25912355 ~ 25937570 (+) True AMCG00006917
AMCG00006911 mRNA upstream 692822 25851405 ~ 25861865 (+) True AMCG00006911
AMCG00006930 mRNA downstream 149871 26704780 ~ 26706164 (+) True AMCG00006930
AMCG00006931 mRNA downstream 215617 26770526 ~ 26770852 (+) True AMCG00006931
AMCG00006933 mRNA downstream 769324 27324233 ~ 27325720 (+) True AMCG00006933
AMCG00006936 mRNA downstream 1061226 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006937 mRNA downstream 1256276 27811185 ~ 27831056 (+) True AMCG00006937
TU142014 other upstream 721745 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 936242 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 1967568 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 2218771 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 2518575 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile