RNA id: TU142183


Basic Information

Item Value
RNA id TU142183
length 1466
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G113537
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 26607659 ~ 26640179 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCCCAATCCCTTACAATGcccgtttttgtttttaagcaatcAAGAAAGCACAGCATTTAAGAGCAAGTTAGACATGTTATGGGACCACCAGGGCGTTTGGGGGTCAGTTAACTGAGGGACTTTTAAACTGATAGTTTGAGCCTTCGTCATTTCACTAATCACCAAAAGCATACCATAAAGGTATTTCCCGATTTAACATCAAAATTGACTTGTCATGTTCAGTCAATGAAAGGTTTTTGACAGttcctttaaaaactaaaaactcaaATCAAGGGAACACAAATTTTAGGCTGCTGGTTAAGCTCTTTATGTAAAAGCAGTTTTGGAAcagtcaaaaaaacaaatcaaaaactttTCTCCAAACCACCCTGTTGATATGTTCCTTTTCTACCAGGTTGCTACTGATCATtgatgaaagtaaaaaaaaaaacactttccccCCTGTCTATAACCCAGAGCATGCATGTAGACAGAAAAATGCTCTACAGCCAGGGAGCAACTGACATTTAAGTGATCATAAATGAGGAAAATAGCCTTCAGAGTGAAATTTGtctttatgattattattataaagtggCCATACAGTACTTTCTCCCTTAAAAAAACAggttatttctctctctctctcatgaaaTTCTATAGCAAAATTTAAATaagcacattttacatttgttttttgtatgttattgttttaattatttgaatccATTGATAGTTTGTTGCAGTCCCTTGGTTTTAGTCCTTAAGGTAGGCATGATTGATTGAAGAGGAGGCAAgaatagagagaaaaaaaaaaaaaaggcgaaGCCAGTAGCAGACTGAGGCCATGGGGAAAGGCGTCCGTCAGCCTTTTCCCCAATCCGTATGTCCGTCTCCTCACTTGAGTAAAGCTTTGATATTTGCGCACTCTGCTGCTTCAAAGGCATTCAGTCCATCTGGTCCTTTCATTTCCTTGTCAGCACCCTTGGAGAGCAGAATCTTCACACACTCAATGTGGCCCTCATAGGTGGCTGAGAGGAGGGGAGTAATGTTGTGTTTGTCTGGGGCATTGACATCTGCTCCATGGGAAAGAAGGAATTCAAGCATTTCGGATTGTCCACAGTCAGCAGCATAGTGTAGTGGCTTCCTTCCACCTTCAAGAGTTCGGTTCACATCCTCCCCCTTAGCAAGAAAATCCTTCACTACATCCAGATCTCCATTTTTTAAGGCCCACATCAGTTCCTTGTCCCCCATTTTTCCTGGTTGTACTACGGTGGATTGCCTCTTGCAGCTGCTGTCTGTTGCACTTTTGGGATTGTGCTTCTCTTCCCCGATTCAGTGTGCCGGGAGGTGATTTTTGTAAATGATTCTGTCAcctgctgtaaataaaaaaaacgtaaacgtttaaagatataaaataaacGTTCAAAGACCAGATAAAAGGGATCCGCCTTTCTTGAACAAAGCACTTCCGACCGCGAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142180 lncRNA upstream 52750 26554687 ~ 26554909 (+) True G113534
TU142100 lncRNA upstream 611395 25996047 ~ 25996264 (+) True G113469
TU142098 lncRNA upstream 611750 25995644 ~ 25995909 (+) True G113467
TU142028 lncRNA upstream 713025 25892657 ~ 25894634 (+) True G113409
TU141999 lncRNA upstream 861800 25740983 ~ 25745859 (+) True G113394
TU142196 lncRNA downstream 4577 26644756 ~ 26645011 (+) True G113541
TU142198 lncRNA downstream 10572 26650751 ~ 26651028 (+) True G113543
TU142201 lncRNA downstream 65057 26705236 ~ 26705468 (+) True G113546
TU142211 lncRNA downstream 172554 26812733 ~ 26813221 (+) True G113551
TU142216 lncRNA downstream 324169 26964348 ~ 26965795 (+) True G113556
AMCG00006928 mRNA upstream 347407 26234852 ~ 26260252 (+) True AMCG00006928
AMCG00006927 mRNA upstream 403918 26196317 ~ 26203741 (+) True AMCG00006927
AMCG00006921 mRNA upstream 635547 25949686 ~ 25972112 (+) True AMCG00006921
AMCG00006917 mRNA upstream 670089 25912355 ~ 25937570 (+) True AMCG00006917
AMCG00006911 mRNA upstream 745794 25851405 ~ 25861865 (+) True AMCG00006911
AMCG00006930 mRNA downstream 64601 26704780 ~ 26706164 (+) True AMCG00006930
AMCG00006931 mRNA downstream 130347 26770526 ~ 26770852 (+) True AMCG00006931
AMCG00006933 mRNA downstream 684054 27324233 ~ 27325720 (+) True AMCG00006933
AMCG00006936 mRNA downstream 975956 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006937 mRNA downstream 1171006 27811185 ~ 27831056 (+) True AMCG00006937
TU142014 other upstream 774717 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 989214 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 2020540 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 2271743 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 2571547 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile