RNA id: TU142201



Basic Information


Item Value
RNA id TU142201
length 233
lncRNA type intronic
GC content 0.41
exon number 1
gene id G113546
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 26705236 ~ 26705468 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACTGAAAATGGGCACATCGAGAGCATGCAGATTTTCCTAAGGAGAAATCATACCGATGCTTTTTCAAAATAGAAAAGTTTTATTTATGGACGTAGCACGGCCAACCAACGTATTGAATCCTGGTGGGGAATACTGAGAAAGCAGAGTGTGCAGTTCTGGATAAACCTCTTCAAAGTACTTCAAGATGATGGTCACTTCTCCGGAGATTTCTTTGACAAAAGTCTGATCCAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142198 lncRNA upstream 54208 26650751 ~ 26651028 (+) True G113543
TU142196 lncRNA upstream 60225 26644756 ~ 26645011 (+) True G113541
TU142183 lncRNA upstream 65057 26607659 ~ 26640179 (+) True G113537
TU142180 lncRNA upstream 150327 26554687 ~ 26554909 (+) True G113534
TU142100 lncRNA upstream 708972 25996047 ~ 25996264 (+) True G113469
TU142211 lncRNA downstream 107265 26812733 ~ 26813221 (+) True G113551
TU142216 lncRNA downstream 258880 26964348 ~ 26965795 (+) True G113556
TU142217 lncRNA downstream 261325 26966793 ~ 26967236 (+) True G113557
TU142224 lncRNA downstream 272441 26977909 ~ 26978110 (+) True G113564
TU142232 lncRNA downstream 353902 27059370 ~ 27059594 (+) True G113572
AMCG00006928 mRNA upstream 444984 26234852 ~ 26260252 (+) True AMCG00006928
AMCG00006927 mRNA upstream 501495 26196317 ~ 26203741 (+) True AMCG00006927
AMCG00006921 mRNA upstream 733124 25949686 ~ 25972112 (+) True AMCG00006921
AMCG00006917 mRNA upstream 767666 25912355 ~ 25937570 (+) True AMCG00006917
AMCG00006911 mRNA upstream 843371 25851405 ~ 25861865 (+) True AMCG00006911
AMCG00006931 mRNA downstream 65058 26770526 ~ 26770852 (+) True AMCG00006931
AMCG00006933 mRNA downstream 618765 27324233 ~ 27325720 (+) True AMCG00006933
AMCG00006936 mRNA downstream 910667 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006937 mRNA downstream 1105717 27811185 ~ 27831056 (+) True AMCG00006937
AMCG00006950 mRNA downstream 1203738 27909206 ~ 27910398 (+) True AMCG00006950
TU142014 other upstream 872294 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 1086791 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 2118117 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 2369320 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 2669124 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile