RNA id: TU142216


Basic Information

Item Value
RNA id TU142216
length 1100
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G113556
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 26964348 ~ 26965795 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtgtataaaactgTATGCTCCCTGAACTCTTTAAGGAAGTTGAGACAAAGACCTGCGTGTCACCAGTCGATCTTGCTTCCGAGCGCTCGttaataaagactctgtttaaTTCAATCATCTTGACGGTCtaatttctaaaaataacttAGGGGATTCTTCAGTATGGTTCCTCCGGAATAAAGTGGACATACTTCATGCCAAATGCCTAGTGGAAAGGGCCTTCATGGAGGCCTGCATCATCGCCTTGACTGAAACCTGACTCGATGAGGCTGTATCAGATGCCCAGttaccagaattcctgagctcatcggcccatgaatTGTTCTACATCAAAGTGAAAGTCTTGGGAGTAtggctcacctagaatgggccaaaggcttggaatccctgctgtgaaaatgtctgtggaatagggcctggaggtagtaaaactctttgaagcaggtgagagccgaaatcctgaaacagagctacgaacccaggccaaccggcatttccaaaagatggcatggattgacatcaggcatgaatcgagcctcctccaataggagactgggtGGGCTGGCACAAATCCAACCTCACAAACTCAAGCACCAATTGCCTATGATCTGAAGGCATAAAAAGTAGCGAACAGCactttctcgctctctctcatcTGAACCGGTAACTCGCTGCCTCAACTCAActtagctctgttgccagaaccagaaccggaaaccaaccaagtctttgctggcaacagaagagtttaactgggagaaggagattgagccataAGAAGAATTCATTAAAGAACTTTACTAAGTAAAGAAATTTAGAACCTGTGCCTGCCCGCCTGTATCCACCTGATCAATGGAGTGTatgcagctggacaattgacaaTTGACaagtcgactgtaatacagaagtgttcagtcatttaaatagctattgagtcttggaaactaacagggccctgctttcctcaaagactttgtcttcaagtaattACAGTGGAAAACTCTGCTTGCcaagaagacatcctgtgcacacccttggagatcttcaaaccagtggaaaatctgtttggaaaagactctactttcgtgAAACCCCANNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142211 lncRNA upstream 151127 26812733 ~ 26813221 (+) True G113551
TU142201 lncRNA upstream 258880 26705236 ~ 26705468 (+) True G113546
TU142198 lncRNA upstream 313320 26650751 ~ 26651028 (+) True G113543
TU142196 lncRNA upstream 319337 26644756 ~ 26645011 (+) True G113541
TU142183 lncRNA upstream 324169 26607659 ~ 26640179 (+) True G113537
TU142217 lncRNA downstream 998 26966793 ~ 26967236 (+) True G113557
TU142224 lncRNA downstream 12114 26977909 ~ 26978110 (+) True G113564
TU142232 lncRNA downstream 93575 27059370 ~ 27059594 (+) True G113572
TU142234 lncRNA downstream 96717 27062512 ~ 27062845 (+) True G113574
TU142245 lncRNA downstream 189740 27155535 ~ 27155862 (+) True G113585
AMCG00006931 mRNA upstream 193496 26770526 ~ 26770852 (+) True AMCG00006931
AMCG00006930 mRNA upstream 258184 26704780 ~ 26706164 (+) True AMCG00006930
AMCG00006928 mRNA upstream 704096 26234852 ~ 26260252 (+) True AMCG00006928
AMCG00006927 mRNA upstream 760607 26196317 ~ 26203741 (+) True AMCG00006927
AMCG00006921 mRNA upstream 992236 25949686 ~ 25972112 (+) True AMCG00006921
AMCG00006933 mRNA downstream 358438 27324233 ~ 27325720 (+) True AMCG00006933
AMCG00006936 mRNA downstream 650340 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006937 mRNA downstream 845390 27811185 ~ 27831056 (+) True AMCG00006937
AMCG00006950 mRNA downstream 943411 27909206 ~ 27910398 (+) True AMCG00006950
AMCG00006942 mRNA downstream 948505 27914300 ~ 27935789 (+) True AMCG00006942
TU142014 other upstream 1131406 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 1345903 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 2377229 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 2628432 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 2928236 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile