RNA id: TU142245



Basic Information


Item Value
RNA id TU142245
length 328
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G113585
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27155535 ~ 27155862 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTGTCAACTGAAACTCTTGAGTGTGTTATGAATGTTATGACTTATGAGATCGAACACATTtcatgtctgcctagcaactagatctgtaatatgtttgtaatatctGTATGTACCTGCCCCGGAACTCTTGGCAATCAGAtttctgacatgtataaaagtgtgtgttgttgcaaaaataaactgaagacaaacgatctggcattgtgtcggtgactttACTTCCTGGGCTCGTAATGCACTGAAGGGTTCCTACTGTTGCTGTGATAAACTTGGGAAGCGATCCACATGTACCTGAAGGGTTTTGACTGGCAGTCAAGTTGTACCTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142234 lncRNA upstream 92690 27062512 ~ 27062845 (+) True G113574
TU142232 lncRNA upstream 95941 27059370 ~ 27059594 (+) True G113572
TU142224 lncRNA upstream 177425 26977909 ~ 26978110 (+) True G113564
TU142217 lncRNA upstream 188299 26966793 ~ 26967236 (+) True G113557
TU142216 lncRNA upstream 189740 26964348 ~ 26965795 (+) True G113556
TU142252 lncRNA downstream 104748 27260610 ~ 27261072 (+) True G113592
TU142255 lncRNA downstream 106369 27262231 ~ 27283320 (+) True G113594
TU142258 lncRNA downstream 113109 27268971 ~ 27363044 (+) True G113596
TU142272 lncRNA downstream 225061 27380923 ~ 27401968 (+) True G113607
TU142367 lncRNA downstream 700252 27856114 ~ 27856462 (+) True G113680
AMCG00006931 mRNA upstream 384683 26770526 ~ 26770852 (+) True AMCG00006931
AMCG00006930 mRNA upstream 449371 26704780 ~ 26706164 (+) True AMCG00006930
AMCG00006928 mRNA upstream 895283 26234852 ~ 26260252 (+) True AMCG00006928
AMCG00006927 mRNA upstream 951794 26196317 ~ 26203741 (+) True AMCG00006927
AMCG00006921 mRNA upstream 1183423 25949686 ~ 25972112 (+) True AMCG00006921
AMCG00006933 mRNA downstream 168371 27324233 ~ 27325720 (+) True AMCG00006933
AMCG00006936 mRNA downstream 460273 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006937 mRNA downstream 655323 27811185 ~ 27831056 (+) True AMCG00006937
AMCG00006950 mRNA downstream 753344 27909206 ~ 27910398 (+) True AMCG00006950
AMCG00006942 mRNA downstream 758438 27914300 ~ 27935789 (+) True AMCG00006942
TU142014 other upstream 1322593 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 1537090 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 2568416 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 2819619 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 3119423 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile