RNA id: TU142255



Basic Information


Item Value
RNA id TU142255
length 377
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G113594
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27262231 ~ 27283320 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


agtgtcctattggaggggggcttgatttatgactgatgtcaatccatgccatcttttggaaatgccggttggcctgggttcgtagctctatgtcgggatttcggctctcatccacttcaaagagtttttatcacctacaggcccctttctccagacatctcatagcagaattccaaactatttggcctcttctcggtgccatcctccccaaaactgtcactttgatgcaaaccagttccaagctgatgagctaaggaaatctgataactttgggggggagaggtcttctttagatcagtgcttcagctcagagcccaaatgctcttatccaaatacacccaacataacgctacatatgtatgtatgtatatatatat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142252 lncRNA upstream 1159 27260610 ~ 27261072 (+) True G113592
TU142245 lncRNA upstream 106369 27155535 ~ 27155862 (+) True G113585
TU142234 lncRNA upstream 199386 27062512 ~ 27062845 (+) True G113574
TU142232 lncRNA upstream 202637 27059370 ~ 27059594 (+) True G113572
TU142224 lncRNA upstream 284121 26977909 ~ 26978110 (+) True G113564
TU142272 lncRNA downstream 97603 27380923 ~ 27401968 (+) True G113607
TU142367 lncRNA downstream 572794 27856114 ~ 27856462 (+) True G113680
TU142401 lncRNA downstream 775804 28059124 ~ 28060590 (+) True G113711
TU142407 lncRNA downstream 794633 28077953 ~ 28078459 (+) True G113717
TU142441 lncRNA downstream 855031 28138351 ~ 28138938 (+) True G113741
AMCG00006931 mRNA upstream 491379 26770526 ~ 26770852 (+) True AMCG00006931
AMCG00006930 mRNA upstream 556067 26704780 ~ 26706164 (+) True AMCG00006930
AMCG00006928 mRNA upstream 1001979 26234852 ~ 26260252 (+) True AMCG00006928
AMCG00006927 mRNA upstream 1058490 26196317 ~ 26203741 (+) True AMCG00006927
AMCG00006921 mRNA upstream 1290119 25949686 ~ 25972112 (+) True AMCG00006921
AMCG00006933 mRNA downstream 40913 27324233 ~ 27325720 (+) True AMCG00006933
AMCG00006936 mRNA downstream 332815 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006937 mRNA downstream 527865 27811185 ~ 27831056 (+) True AMCG00006937
AMCG00006950 mRNA downstream 625886 27909206 ~ 27910398 (+) True AMCG00006950
AMCG00006942 mRNA downstream 630980 27914300 ~ 27935789 (+) True AMCG00006942
TU142014 other upstream 1429289 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 1643786 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 2675112 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 2926315 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 3226119 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile