RNA id: TU142258



Basic Information


Item Value
RNA id TU142258
length 525
lncRNA type sense_over
GC content 0.50
exon number 2
gene id G113596
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27268971 ~ 27363044 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


agtcaccctgaaaacaactggTAACACACTATGCCGTGAAGGACtaaaatcctgcagcgcccgcaaggtccccctgctcaagaaagcacatgtacaggcctgtctgaagtttgctaatgaacatctgaatgattcagaggagaactgggtgaaagtgttgtggtcagatgagaccaaaatcgagctctttggcatcaactcaactcgccgtgtttggaggaggaggaatgctgcctatgaccccaataacaccatccccaccgtcaaacatggaggtggaaacattatgctttgggggtgtttttctgctaaggggacaggacaactgcaccgcatcaaagggacgatggacggggccatgtaccgtcaaatcttgggtgagaacctccttccctcagccagggcattgaaaatgggtcgtggatgggtattccagcatgacaatgacccaaaacacacagccaaggcaacaaaggagtggctcaagaagaagcacattatgGTCCTGGAGtagcctagccagtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142252 lncRNA upstream 7899 27260610 ~ 27261072 (+) True G113592
TU142245 lncRNA upstream 113109 27155535 ~ 27155862 (+) True G113585
TU142234 lncRNA upstream 206126 27062512 ~ 27062845 (+) True G113574
TU142232 lncRNA upstream 209377 27059370 ~ 27059594 (+) True G113572
TU142224 lncRNA upstream 290861 26977909 ~ 26978110 (+) True G113564
TU142272 lncRNA downstream 17879 27380923 ~ 27401968 (+) True G113607
TU142367 lncRNA downstream 493070 27856114 ~ 27856462 (+) True G113680
TU142401 lncRNA downstream 696080 28059124 ~ 28060590 (+) True G113711
TU142407 lncRNA downstream 714909 28077953 ~ 28078459 (+) True G113717
TU142441 lncRNA downstream 775307 28138351 ~ 28138938 (+) True G113741
AMCG00006931 mRNA upstream 498119 26770526 ~ 26770852 (+) True AMCG00006931
AMCG00006930 mRNA upstream 562807 26704780 ~ 26706164 (+) True AMCG00006930
AMCG00006928 mRNA upstream 1008719 26234852 ~ 26260252 (+) True AMCG00006928
AMCG00006927 mRNA upstream 1065230 26196317 ~ 26203741 (+) True AMCG00006927
AMCG00006921 mRNA upstream 1296859 25949686 ~ 25972112 (+) True AMCG00006921
AMCG00006936 mRNA downstream 253091 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006937 mRNA downstream 448141 27811185 ~ 27831056 (+) True AMCG00006937
AMCG00006950 mRNA downstream 546162 27909206 ~ 27910398 (+) True AMCG00006950
AMCG00006942 mRNA downstream 551256 27914300 ~ 27935789 (+) True AMCG00006942
AMCG00006943 mRNA downstream 742564 28105608 ~ 28128135 (+) True AMCG00006943
TU142014 other upstream 1436029 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 1650526 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 2681852 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 2933055 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 3232859 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile