RNA id: TU142308



Basic Information


Item Value
RNA id TU142308
length 438
lncRNA type sense_over
GC content 0.51
exon number 2
gene id G113631
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27270459 ~ 27363030 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCCAGGACcataatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgacggtacatggccccgtccatcgtccctttgatgcggtgcagttgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggaaacattatgctttgggggtgtttttctgctaaggggacaggacaactgcaccgcatcaaagggatgaTGGACGGGGCCaagtaccgtcaaatcttgggtgagaacctccttccctcagccagggcattgaaaatgggtcgtggatgggtattccagcatgacaatgacccaaaacacacaacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142247 lncRNA downstream 105061 27165179 ~ 27165398 (-) True G113587
TU142246 lncRNA downstream 114602 27155535 ~ 27155857 (-) True G113586
TU142233 lncRNA downstream 210865 27059369 ~ 27059594 (-) True G113573
TU142110 lncRNA downstream 1232136 26001446 ~ 26038323 (-) True G113479
TU142114 lncRNA downstream 1259960 26001446 ~ 26010499 (-) False G113479
TU142352 lncRNA upstream 436908 27799938 ~ 27800294 (-) True G113667
TU142359 lncRNA upstream 439460 27802490 ~ 27805153 (-) True G113673
TU142368 lncRNA upstream 493081 27856111 ~ 27856461 (-) True G113681
TU142417 lncRNA upstream 695331 28058361 ~ 28058567 (-) True G113722
TU142418 lncRNA upstream 695689 28058719 ~ 28058931 (-) True G113723
AMCG00006929 mRNA downstream 630511 26608543 ~ 26639948 (-) True AMCG00006929
AMCG00006926 mRNA downstream 909008 26192389 ~ 26361451 (-) True AMCG00006926
AMCG00006924 mRNA downstream 1084697 26184251 ~ 26185762 (-) True AMCG00006924
AMCG00006925 mRNA downstream 1129640 26134171 ~ 26140819 (-) True AMCG00006925
AMCG00006923 mRNA downstream 1165073 26092897 ~ 26105386 (-) True AMCG00006923
AMCG00006935 mRNA upstream 274190 27637220 ~ 27649919 (-) True AMCG00006935
AMCG00006934 mRNA upstream 305756 27668786 ~ 27677200 (-) True AMCG00006934
AMCG00006938 mRNA upstream 442453 27805483 ~ 27824074 (-) True AMCG00006938
AMCG00006939 mRNA upstream 601937 27964967 ~ 27970379 (-) True AMCG00006939
AMCG00006941 mRNA upstream 639472 28002502 ~ 28015328 (-) True AMCG00006941
TU142176 other downstream 769778 26500015 ~ 26500681 (-) True G113530
TU141596 other downstream 3863252 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 6320623 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 7034253 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 7634534 19633237 ~ 19635925 (-) False AMCG00006774
TU142323 other upstream 39570 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 904232 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 928425 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 1348189 28711219 ~ 28812548 (-) True G113833

Expression Profile