RNA id: TU142323


Basic Information

Item Value
RNA id TU142323
length 3328
RNA type TUCP
GC content 0.33
exon number 5
gene id G113645
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27402600 ~ 27527348 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctccctctttctttctctaggTCTCCCCTGCTGTGAAGTCTGTCCCTGGAGTGACCTTGCCTTAATGAGCTCCTGATCACGAGTTAGGAATAGAGCTTTTAGTTGGGTGTCTTCACAACAAAATAGGCAATACATTCTAAGTCTTATTGAAGGCAAGAGAGAAACAGGGACAGAGAAGGAAACCCACAGCAAATCACAGCCACATCCAAGCCTTCCAACTCAAAGATGCAGAAACAGAAGCAGTGGGTGATGGGAGCTATCATCATGTCCCTCTTGGCTCTGTCTGCAATGGCAGCGGAAGCTGGCAAAGCGGACAAACAAGGAAAGAAGGAGCGGAAGTCAGACTGTGGAGATTGGCAGTGGAGTGTCTGCGTGGCCAATGTTGGTGACTGTGGCCTAGGAACAAGAGAAGGAACCCGGACAGGAAATGACTGCAAGCAAACAATTAAAACCCAGAGATGCAAGATACCCTGTAATTGGAAAAAACAGTTTGGAGGTGAGTGCAAGTATGACTTCCAGGCATGGGGAGACTGTGACATGTCTACTGGCAGGAAGAACCGTACTGGCATACTGAAGAGAGCCCTCCTGGATGCTACTTGTCCCGACACTGTCAGTGCTACAAAGCCCTGTGGAAAAATTCCCAAGATAAAATTACAAGACTCCAAGAAGCCAAAGCGAGAGGGAAAGAAGAAGGAACGCACCCCACTGGACTAGCGATGCTGCTGTTTAATAGGGAAGGTGCTTTATCAATATGGGTTGTAGAATTTCTCTTAGTAGTCTCCAGCCTGTAACTTTTTATTCCCACGTATAATAGATCATCTGttcagatgaaaaataatttgtagcagatataatacaaaacaaataaaacatcaacaaaaaataaaatattatgtttccttttaaaccatagaaatgtaactgtaattgTAACTCTTAGGGATTTTAATATCCAATAATATAAACAACGCAAAGTGATTAATACTAGATTTTATGGAACTTCCTGAATAATTCTTCCTTTTTAAGTAACATATTTGAATGTAATActtgaaaaaacataattcagaCATAACCTTACAcatgataatagtaataataatcataataattatgattattattatatattgtcaGGTTTCAATCGGGACAGTGTATTGCATAGTTAGtaggaaatattttaataattttttacttcattgttttttatttgtgattggTTCTGTAGATTTATTCCCAGCTGTGCTATATGTTTTCTCTGCTATATGCTGtgctaaatcaaaacttcaacccaCTTCAGAATCACAAATCCTATAAGCAATGTTTGATGGTGAAATATATGCAGTTGTCAAATCTTATCCTATAGTGAGTCTCAAATAGCTAAAATTGGGTATACAAGTTTATTCTAACAAAATCTGAATTTCCAATCCAAGAGTACacttaatgtattaatttaatgtattctgaattattgttttatcaCATATAGGAAGAGATATCAATCACctgtgaaaatgcattataaacagCATACacactatttaaattaatattagtGAGATTCTAATGCTTTTTAGCAAACTGAAGTTAAACTTGAACACCATCTTGAGAACTGGTGTAGCAGATTTCATTGGAATCCCACAATCTAATGCAGAATCAGTTCTtctgaaaatgtgaatgtttgaAAAGAGCACTTCAAAGTGATGTGTTTGGAATTTGCTGATAGCAGCTTGGttgaagttttcatttaatccagAGCTCGGttaagattaaattaatctttctcAATCAGCTGTGAATTGCTCTTGTACCAATAAAGGAGAACCTACTAtgtaacaaataaacacaaccaaattcaatgtaaaaacacaaaaccttcAGAATGAATACTACATATTAAAACTAAGGCctggaacaaattaaaacttGACATACCCACCAattacatattacaatttcaatgctggatagtggttttattttattttatttattttattttttattttttttgggagggggggttgtATGTTGTATGACTTCTCCTTCTACCGATTGCAAAACTGCCATCAAGTACtgagtttttaatttatgataGGTGGGTGGTCAAAGCTACCAGACAGTCAATGACATTAAATAATTTTTCAGAACTATGgtgtcttttaaatgtgtttgcaaTGCAGTGTCTCATTTTATGTGGAACATCTAATTTACTCTGAATAATATTTgcccatttttgttttcaagcaGTTTGGAATCAAAGTATGTTAAAGATTCAGATCATTGAGCTTAATTCCAATTTGTCTCTTAGCAAATACAGTAAATCCAAGGAGACTCAAGCAAAACcctaatgtttaaattgtactATTCCTACTACTAACTATGGAAGAAGTTtggctgtgttttctttttcttttcatgtgaCTCAGAGGAaatttaagtgtatttttaatgccaCTGTATCAAATCCAGTgcactttattttccttttttattagtggaaaaataataaaacaacatttaataatCTTTGAGGACAAAACTACATTGATTAAAcattgattaaatgtaaaaaaactgattaaaattttgaaaaataagatcTATAAATTGTGTTTGATTCAGTGTTCTGTTAACTAATGTGCCTCAAAACTCAAGGGATTTGTATAGCATACACAGTTTAATACTgctgtatttttcattctttttcttttttcaaacacaTATGAATTTCTACcatagttaataaaataaataaaaaagtctattgcagttttttttttttttgtggtctaggtctactactactaccactacttactgttattattgaatttagtaaaacaataaaatactcaTGTAATATGTAGTTTTTCACTTTCACAGATGTTCTTAAGTCACTCGgatgtattttcaaaacaaaagtatatCTCAATAGCCATGAATCACTGTATAGCTAATGTTTAAAGTGATGAACTAGTTGCAGTGGCATTTTAATATGCCATCTTTTGTAACTTCAACTAAATCCAttatgctttcaaaaacatacTGAATTCTTACACATATATCATGCAGTCTTTCAGgctcataaataaattaaagcaaaacctaaatatgtatacacattatttttgcagttgattattaaacaaacaatgcaaaagGTATTAATGTCAGAAACCAggatatatttgtttccattacATTAGACAGGGGCAAACCTttcatttccaaaatatattgaatCTAGAATCTAAGCCTGGACCAAATTGACCTAATGTAAACCCACTATATGGTTTAAacttaaatctgcatttttttgtacttAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142308 lncRNA downstream 39570 27270459 ~ 27363030 (-) True G113631
TU142247 lncRNA downstream 237202 27165179 ~ 27165398 (-) True G113587
TU142246 lncRNA downstream 246743 27155535 ~ 27155857 (-) True G113586
TU142233 lncRNA downstream 343006 27059369 ~ 27059594 (-) True G113573
TU142110 lncRNA downstream 1364277 26001446 ~ 26038323 (-) True G113479
TU142352 lncRNA upstream 272590 27799938 ~ 27800294 (-) True G113667
TU142359 lncRNA upstream 275142 27802490 ~ 27805153 (-) True G113673
TU142368 lncRNA upstream 328763 27856111 ~ 27856461 (-) True G113681
TU142417 lncRNA upstream 531013 28058361 ~ 28058567 (-) True G113722
TU142418 lncRNA upstream 531371 28058719 ~ 28058931 (-) True G113723
AMCG00006932 mRNA downstream 93430 27308892 ~ 27309170 (-) True AMCG00006932
AMCG00006929 mRNA downstream 762652 26608543 ~ 26639948 (-) True AMCG00006929
AMCG00006926 mRNA downstream 1041149 26192389 ~ 26361451 (-) True AMCG00006926
AMCG00006924 mRNA downstream 1216838 26184251 ~ 26185762 (-) True AMCG00006924
AMCG00006925 mRNA downstream 1261781 26134171 ~ 26140819 (-) True AMCG00006925
AMCG00006935 mRNA upstream 109872 27637220 ~ 27649919 (-) True AMCG00006935
AMCG00006934 mRNA upstream 141438 27668786 ~ 27677200 (-) True AMCG00006934
AMCG00006938 mRNA upstream 278135 27805483 ~ 27824074 (-) True AMCG00006938
AMCG00006939 mRNA upstream 437619 27964967 ~ 27970379 (-) True AMCG00006939
AMCG00006941 mRNA upstream 475154 28002502 ~ 28015328 (-) True AMCG00006941
TU142176 other downstream 901919 26500015 ~ 26500681 (-) True G113530
TU141596 other downstream 3995393 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 6452764 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 7166394 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 7766675 19633237 ~ 19635925 (-) False AMCG00006774
TU142485 other upstream 739914 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 764107 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 1183871 28711219 ~ 28812548 (-) True G113833

Expression Profile