RNA id: TU142367


Basic Information

Item Value
RNA id TU142367
length 349
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G113680
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27856114 ~ 27856462 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gccttcgctccccacgtgcatcaatgagccttggccacccatgaccctgtcgccggttcaccgcttttccttccttggaccacttttgataggtactgaccactgtagactgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatgacaatttggcccttgtcaaagtcgctcagatccttgcgcttgcccatttttcctgcttctaacacatcaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttatttacttcacctgtcagtggtcataatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142272 lncRNA upstream 454146 27380923 ~ 27401968 (+) True G113607
TU142258 lncRNA upstream 493070 27268971 ~ 27363044 (+) True G113596
TU142255 lncRNA upstream 572794 27262231 ~ 27283320 (+) True G113594
TU142252 lncRNA upstream 595042 27260610 ~ 27261072 (+) True G113592
TU142245 lncRNA upstream 700252 27155535 ~ 27155862 (+) True G113585
TU142401 lncRNA downstream 202662 28059124 ~ 28060590 (+) True G113711
TU142407 lncRNA downstream 221491 28077953 ~ 28078459 (+) True G113717
TU142441 lncRNA downstream 281889 28138351 ~ 28138938 (+) True G113741
TU142443 lncRNA downstream 284821 28141283 ~ 28142251 (+) True G113743
TU142447 lncRNA downstream 344080 28200542 ~ 28204108 (+) True G113747
AMCG00006937 mRNA upstream 25058 27811185 ~ 27831056 (+) True AMCG00006937
AMCG00006936 mRNA upstream 228781 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006933 mRNA upstream 530394 27324233 ~ 27325720 (+) True AMCG00006933
AMCG00006931 mRNA upstream 1085262 26770526 ~ 26770852 (+) True AMCG00006931
AMCG00006930 mRNA upstream 1149950 26704780 ~ 26706164 (+) True AMCG00006930
AMCG00006950 mRNA downstream 52744 27909206 ~ 27910398 (+) True AMCG00006950
AMCG00006942 mRNA downstream 57838 27914300 ~ 27935789 (+) True AMCG00006942
AMCG00006943 mRNA downstream 249146 28105608 ~ 28128135 (+) True AMCG00006943
AMCG00006944 mRNA downstream 291376 28147838 ~ 28188827 (+) True AMCG00006944
AMCG00006947 mRNA downstream 436558 28293020 ~ 28331354 (+) True AMCG00006947
TU142014 other upstream 2023172 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 2237669 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 3268995 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 3520198 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 3820002 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile