RNA id: TU142401


Basic Information

Item Value
RNA id TU142401
length 1351
lncRNA type inter_gene
GC content 0.32
exon number 3
gene id G113711
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28059124 ~ 28060590 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTGGTTTTaggttgtttattttgcttctccacaggctttcatttcagagcttatttacaaaaaaaaataatcgtaagaaaaatacaaagcatagaATTTTCTGAGAAGCATACATGGAACACTACAGAGACACTTTACGCCAAGTTACTTGTCTATTGGgtgcaaatattaatttacattcacCTGGGTTGAAGAAAGTAATGCGAGAGAAACTGTCATGTAACTCAGCAAGCGACAGACACTCTGTAATATGGTGCAAACATTGCCTCCCACATCTGTCTAAACATCTGGAAAAGGTCAGAGATCCAAGGAAAAGCTGAGGGAATggctggaaaataaacaaagtggaacagttatttattgatttaaattgtttagtATAAGCAAGTCCTAAATGCATTCCATATTAAATTGTTCTTCAAACATTGTactttatgtattatgtatttacctatttttaaaaagaatatgCAGTAAAGGGATTACACATTTGCACATCTGGAGCACaccatataaatgtatttatagaaatatacataatattacaTAATGTTAAGGTGGGGCATTTCTTGGACAACTAACGCTACAACCTTTGCCGAATTTTTTTCCCCGAAACATCTCAGAAATCTAATGTTCATGTAAATATtctaatttacttaattgaagaaaacaattaaaattggACTAAGAGATTTAGCAAAAGTAAATCCTCAgtaaaaaagtataatataaaaGATTGGTATGTAACTTTCTCTATAAcaatattttcactttatttgtgTGCTTTATTCCATCATTTTATcatgttctgtatatttattgCTGAATTTAATTCAATTGCTTATTTGAGTTCAATCAAATCAACAgggtttaattaaacaataagttATACTAGAGACTACAATAGATCAGACTTTGTCAAAACCTGGGATGTAAGTGTTGCAAGATGTTTGCCTTTGCCTTTAAGCATTTCCTCTCTATCCCCGTCTGTTCtcccttaataataataataataaaacagtaatttaactTGTTTGGATAAAatccatatatacatttagCTCTCACTAATGTCAGACTATGAAcatacagctctagaaaaaagtcagttttgGGATCGTAGGACATTAAGAGACGCATATTGCATATTGCTGTTGAATACGCAAAATGGTGATGAACCAACGCTGATGATGAAATCTGTGTGATAAATAGTtgctggtgatgaaaagtgtgtgacaAAAAGACATGCTCCCGAGCACAATAATATAGCAATATCAGTTAGGTGGTCACACATGTATAtttcatgtacagtgagggaaaaaagtatttgatcccctgctgattttgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142367 lncRNA upstream 202662 27856114 ~ 27856462 (+) True G113680
TU142272 lncRNA upstream 657156 27380923 ~ 27401968 (+) True G113607
TU142258 lncRNA upstream 696080 27268971 ~ 27363044 (+) True G113596
TU142255 lncRNA upstream 775804 27262231 ~ 27283320 (+) True G113594
TU142252 lncRNA upstream 798052 27260610 ~ 27261072 (+) True G113592
TU142407 lncRNA downstream 17363 28077953 ~ 28078459 (+) True G113717
TU142441 lncRNA downstream 77761 28138351 ~ 28138938 (+) True G113741
TU142443 lncRNA downstream 80693 28141283 ~ 28142251 (+) True G113743
TU142447 lncRNA downstream 139952 28200542 ~ 28204108 (+) True G113747
TU142465 lncRNA downstream 155410 28216000 ~ 28216235 (+) True G113760
AMCG00006942 mRNA upstream 123335 27914300 ~ 27935789 (+) True AMCG00006942
AMCG00006950 mRNA upstream 148726 27909206 ~ 27910398 (+) True AMCG00006950
AMCG00006937 mRNA upstream 228068 27811185 ~ 27831056 (+) True AMCG00006937
AMCG00006936 mRNA upstream 431791 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006933 mRNA upstream 733404 27324233 ~ 27325720 (+) True AMCG00006933
AMCG00006943 mRNA downstream 45018 28105608 ~ 28128135 (+) True AMCG00006943
AMCG00006944 mRNA downstream 87248 28147838 ~ 28188827 (+) True AMCG00006944
AMCG00006947 mRNA downstream 232430 28293020 ~ 28331354 (+) True AMCG00006947
AMCG00006945 mRNA downstream 271878 28332468 ~ 28364610 (+) True AMCG00006945
AMCG00006946 mRNA downstream 307534 28368124 ~ 28401071 (+) True AMCG00006946
TU142014 other upstream 2226182 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 2440679 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 3472005 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 3723208 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 4023012 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile