RNA id: TU142407



Basic Information


Item Value
RNA id TU142407
length 487
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G113717
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28077953 ~ 28078459 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ggggaccttgcgggcgctgcaggatttcagtccttcatggcgtagtgtgttaccaattgttttcttggtgactattgtcccagctgccttgagatcattaacaagatccttccgtgtagttctgggctgattcctcaccgttctcatgatcattgaaactccacgaggtgagatcttgcatggagccccagaccgagggagactgacagttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttcccaccaagctgcttggcgatgggcttgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacagctGCCttgtccctttaagagagtgctcatAATCTCAGCTCgatacctgtataaaagacacctgggaacCAGAAATCTTGCtaattgataggggatcaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142401 lncRNA upstream 17363 28059124 ~ 28060590 (+) True G113711
TU142367 lncRNA upstream 221491 27856114 ~ 27856462 (+) True G113680
TU142272 lncRNA upstream 675985 27380923 ~ 27401968 (+) True G113607
TU142258 lncRNA upstream 714909 27268971 ~ 27363044 (+) True G113596
TU142255 lncRNA upstream 794633 27262231 ~ 27283320 (+) True G113594
TU142441 lncRNA downstream 59892 28138351 ~ 28138938 (+) True G113741
TU142443 lncRNA downstream 62824 28141283 ~ 28142251 (+) True G113743
TU142447 lncRNA downstream 122083 28200542 ~ 28204108 (+) True G113747
TU142465 lncRNA downstream 137541 28216000 ~ 28216235 (+) True G113760
TU142521 lncRNA downstream 540547 28619006 ~ 28619812 (+) True G113805
AMCG00006942 mRNA upstream 142164 27914300 ~ 27935789 (+) True AMCG00006942
AMCG00006950 mRNA upstream 167555 27909206 ~ 27910398 (+) True AMCG00006950
AMCG00006937 mRNA upstream 246897 27811185 ~ 27831056 (+) True AMCG00006937
AMCG00006936 mRNA upstream 450620 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006933 mRNA upstream 752233 27324233 ~ 27325720 (+) True AMCG00006933
AMCG00006943 mRNA downstream 27149 28105608 ~ 28128135 (+) True AMCG00006943
AMCG00006944 mRNA downstream 69379 28147838 ~ 28188827 (+) True AMCG00006944
AMCG00006947 mRNA downstream 214561 28293020 ~ 28331354 (+) True AMCG00006947
AMCG00006945 mRNA downstream 254009 28332468 ~ 28364610 (+) True AMCG00006945
AMCG00006946 mRNA downstream 289665 28368124 ~ 28401071 (+) True AMCG00006946
TU142014 other upstream 2245011 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 2459508 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 3490834 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 3742037 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 4041841 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile