RNA id: TU142441


Basic Information

Item Value
RNA id TU142441
length 588
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G113741
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28138351 ~ 28138938 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAAAATGTCAGGTGGTGCAACTGTCCGAACATATATGCAGAGAACAAATTTGTagtaaaaaggttattttactcaataaaattcttaatcaaatagtttggcataattgtatgttaaattgcttttaaattattaaaagttgtgaaacagtgctatgttaaatgtattctattaaaaaaaaaaaaaaacttttgtccataaaatgcatttctccaaatgtcaaatgatgcaacccccccaaaaaaagcatttttatgtaatatcaCTTTAAGAAAACTATGAACAGTATATGGCATCACAAAAGAAGACCCCAAATGACCTCTATGCTGCAATAACAAGATGACCcccagaaaactacaaaacaaaaatggttttgtagcaatttatgttttattttaaaaatgtatctatacACTTTACCAAAGGCCAAAagttaatatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagacTATAATTTTAACGGTAGGTgtatagtcaccaagaaaacaattggtaacacactacgccgtgaaggactgaaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142407 lncRNA upstream 59892 28077953 ~ 28078459 (+) True G113717
TU142401 lncRNA upstream 77761 28059124 ~ 28060590 (+) True G113711
TU142367 lncRNA upstream 281889 27856114 ~ 27856462 (+) True G113680
TU142272 lncRNA upstream 736383 27380923 ~ 27401968 (+) True G113607
TU142258 lncRNA upstream 775307 27268971 ~ 27363044 (+) True G113596
TU142443 lncRNA downstream 2345 28141283 ~ 28142251 (+) True G113743
TU142447 lncRNA downstream 61604 28200542 ~ 28204108 (+) True G113747
TU142465 lncRNA downstream 77062 28216000 ~ 28216235 (+) True G113760
TU142521 lncRNA downstream 480068 28619006 ~ 28619812 (+) True G113805
TU142540 lncRNA downstream 508327 28647265 ~ 28647523 (+) True G113824
AMCG00006943 mRNA upstream 10216 28105608 ~ 28128135 (+) True AMCG00006943
AMCG00006942 mRNA upstream 202562 27914300 ~ 27935789 (+) True AMCG00006942
AMCG00006950 mRNA upstream 227953 27909206 ~ 27910398 (+) True AMCG00006950
AMCG00006937 mRNA upstream 307295 27811185 ~ 27831056 (+) True AMCG00006937
AMCG00006936 mRNA upstream 511018 27616135 ~ 27627333 (+) True AMCG00006936
AMCG00006944 mRNA downstream 8900 28147838 ~ 28188827 (+) True AMCG00006944
AMCG00006947 mRNA downstream 154082 28293020 ~ 28331354 (+) True AMCG00006947
AMCG00006945 mRNA downstream 193530 28332468 ~ 28364610 (+) True AMCG00006945
AMCG00006946 mRNA downstream 229186 28368124 ~ 28401071 (+) True AMCG00006946
AMCG00006951 mRNA downstream 354497 28493435 ~ 28494011 (+) True AMCG00006951
TU142014 other upstream 2305409 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 2519906 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 3551232 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 3802435 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 4102239 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_12613737_12614861.mRNA True 4500 mRNA 0.39 2 CI01000012 12611559 ~ 12616211 (-)