RNA id: TU142484


Basic Information

Item Value
RNA id TU142484
length 827
RNA type TUCP
GC content 0.46
exon number 2
gene id G113775
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28267262 ~ 28292598 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcaactcattacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacataAGGCTGGAATGGGTTACAAAGACCAtcaccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaataactgtcagtctcccttggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagctcagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactacgccgtgaaggactgaaatcctgcagcgcccacAAGATCCCCCTGCTCAAGACTGCACATGTAGAGGcctgtctgaagtttgccaatgaacatctgaatgattcagaggagaactgggtgaaagtgttgtggtcagatgagaccaaaatcgagctctttggcatcaactcaactcgccgtgtttggaggaggaggaatgctgcctatgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgctttgggggtgtttttcctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcgaaggggtcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142419 lncRNA downstream 215164 28059128 ~ 28076291 (-) False G113724
TU142420 lncRNA downstream 230863 28059128 ~ 28060592 (-) True G113724
TU142418 lncRNA downstream 232524 28058719 ~ 28058931 (-) True G113723
TU142417 lncRNA downstream 232888 28058361 ~ 28058567 (-) True G113722
TU142368 lncRNA downstream 434994 27856111 ~ 27856461 (-) True G113681
TU142514 lncRNA upstream 114808 28407406 ~ 28407839 (-) True G113799
TU142539 lncRNA upstream 348531 28641129 ~ 28641437 (-) True G113823
TU142594 lncRNA upstream 571281 28863879 ~ 28867820 (-) True G113876
TU142623 lncRNA upstream 779583 29072181 ~ 29074799 (-) True G113905
AMCG00006949 mRNA downstream 67868 28217613 ~ 28223587 (-) True AMCG00006949
AMCG00006948 mRNA downstream 147239 28141257 ~ 28144216 (-) True AMCG00006948
AMCG00006940 mRNA downstream 244379 28016663 ~ 28047076 (-) True AMCG00006940
AMCG00006941 mRNA downstream 276127 28002502 ~ 28015328 (-) True AMCG00006941
AMCG00006939 mRNA downstream 321076 27964967 ~ 27970379 (-) True AMCG00006939
AMCG00006955 mRNA upstream 457664 28750262 ~ 28811479 (-) True AMCG00006955
AMCG00006957 mRNA upstream 575304 28867902 ~ 28868926 (-) True AMCG00006957
AMCG00006956 mRNA upstream 587719 28880317 ~ 28892493 (-) True AMCG00006956
AMCG00006958 mRNA upstream 609743 28902341 ~ 28906211 (-) True AMCG00006958
AMCG00006959 mRNA upstream 638432 28931030 ~ 28966524 (-) True AMCG00006959
TU142323 other downstream 764107 27402600 ~ 27527348 (-) True G113645
TU142176 other downstream 1790774 26500015 ~ 26500681 (-) True G113530
TU141596 other downstream 4884248 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 7341619 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 8055249 20235856 ~ 20236206 (-) True G112420
TU142549 other upstream 418621 28711219 ~ 28812548 (-) True G113833

Expression Profile