RNA id: TU142594


Basic Information

Item Value
RNA id TU142594
length 3555
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G113876
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28863879 ~ 28867820 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGGATGACCAGCGCGTGACACCAGGGTGTGAGGTGACTTGTTAAAGGAGAAgtgtgaagattttttttttttttttttttaaacatccagCACTGTATGCTTTCTGAAGCTCTTGAGTGCTTTATATTCTGCAGGAAAAGGAGGGGGAATACACCACCTCTAGGCTGACTGAGGATACTTTTTATTCCGTAGCGTCGTGGATGGGTTTAGGGACGTATGGCTATCCTAGCACCaggcttttaaataataaattaaaaagaaaaagaaaaccaatggACAAAAGGATGCAATATTCAGTGGCCAAAGAAGGTGTGGGAATGGCTATTGTAAATCCCTTAGGTTTGGGTTAGGTTCCTTATACTGGCCAAATACTTATTCCagaatatatagaaatatttaCTCATATTTTGGTGGCCTTTGTCAAAATGTTCCAAGAGGGATgttagttttcttgttttgttttgttttcttttcttatttttaaaaccgGTTGTAAAGTAAGagttattaataatagtgcATCTGTCCGGTCTTTACGGCGTCGAAGGAATTGTCAGGAGCTTCACAAAGACGACAGTCAGCTGCATGGTGTGAAAAAGCTGAATGTCTCTGCAGACATTGCTTGTGAGGATAATTTAAGCTTTAAATCTTTATCTAGTACTAATGGTAACAGCTTTTATAATCATGACTGCATTAGGGGCCTCTTTCAAATAGTTGGATTTAaatggatatttaaaaaataaaataaaaaagtgttctGTACGGACATGTATTTACCCATCAGTTTTTGATGTTGAAACACTGtgattatataaatgttgttGGACaacattagtttaaaaaaaaaaaaaagtaaaatgtggaACTTGGagggttattaaaaaaacaaaataaataaggctAGCTATATCCATATACAGTACTTATTGGAGACACTttaactgatttgtttttattttattttcctttgtactTTCTTTAGATAATTAATGTGAatgtaaaatggtttaatgtaCTTGAATAACAAGTCTTTTCCTTCCCCCATCACCCAGTACGCGTGCTGGATTTACAGTGCCTTGTACCTTTTCATTTGCTTCGGATCTGGCATGGAGTTGCTGAAGCTTTGTTGGTCCTGTGAAACAATCAGAAAGGAGTCTTGTGAGGTATATTGGGGTGGAATTTGTTTTGGTGCCATTTTGTTATTGTCAAATTTAATAGTTCTAATCCAAAAGTAGAAACGTATTAGAGTATTTTCAACTACAACTACAGCACATGAGCACCCATACACAGAGTATATGTAACTAGCAGGGAAGGGAAGGTACAGTGAACTTGGAAGGATCATCTCACATCTGGGATTTCATTCAAGACAAAAGTGCTTAAAGGATTTATGCACTCCTCAAATACTCTTGTTAAAGCTACCAAGTTGATGTACAGCTGGGCTCTCAACCTTGACTCCAATTTGGTTTAGTCATATTTGTAAGTGTCTTTCAACACAAGTCTAGTGCACTGAGCTGTCCGACACCTGAAGACCTACACAAGCACCCTCCCAAGCACACTTATCACTGTTCATTTCCCTTACTATGGAACACCTGGACGTTTCTATAGTGATAACAGTTTTCAGAAATTTggctgatttttcttttcagtgtaaATTCCTTTCAAACATCtactttttttgggggggttattTTACATCATCCCTGCTCTATATTCCACGCATGATAGTTCTAATTTTGTAGTGAAAAATGTTGACGGTTAGTgtctggaaaaagaaacaaaggttggttttcacaataaaaacctGTACATGTTTCCAGTGGGGTATTGATTCCTTCATGACATTGGCTGTGCCTTCTGACAGCATATGTAttagaaaatatggatttgaaacaattaCAGATTCAAACAAGTCAAACTCTTGTCTTAATAACTTAAGacacacaaaaatagaaatgggGAATCAAGAGTTTCCAGACAATTCTTTTCAGCCTCTACCTACAATTGCAGAAACATTGTCTTCCACTCATTCCCTCACTTGATCACGATATTTGTCATGTGTACATCGTGTCTGTACATGGTGTTGGTTAAATTTCATGCTACTCTTCAATGAACTTCAATCAGATGTTTTTGGTATCCTATGATGTCCTGAGCCCAGCTGTTGTTAGAAGTGCATGAGTATTCCCTGTGGAATGAAGACATTTAGCAGAGTCCTGCAGTATAACAAAAGGTTTTTgttaagtttcttttttttttttttttttaatgcatagatgtaaaaataaaaccttagaaaagtaaatgtatggttttcattttgtcatgGCTACAGGTCACTTTTGCAATGTTGTAGAGACTGCTAAATGAAAAACCTTCCTTTCTCCATTTGTTCCCTGCTTTTGCAAATCATTGTCTGGTATAGGGACCCATCACTTGAAACTGGTTATGTAATCTAATATACTCAgcagttattttgtgtgtggttttgttttgtctgtttttttttaatgtttttctgctactttttttctatatattacTTTGCCTGTTTTCACATTTGTCctttcattaagaaaaaaaaatcagttcagTATTACATAGCAGAATTCTGATAAAGCTGTGAAAGAAAAAGTcactttgctttcttttctttatttactttacttttccaAAAGTGAACTCTTCTACAATGCCACCAAAATTAGTGCCATTCCTGAgtacaaaaaaacactgaagcaaCATCTTCACTAACTTCAGACCTGAACAAACTGTTTACTTTGGAGAATAATAAAATGGCTGCAATACAGAAGAATATGCAATGATGTTTTAGGGGTTGGAGGTGGATGGTTTGTAGGTGGAAGAGGATTTATTTAGTTCCTTGCTATTGTATAATGGAGGGAAGTTACTGAATTCAAGAAAGTGTATAACAATTCTATTAGCTGGAATGCAGATTCTGctattattgttaatgtttcTGTAAGATaagattatatacatataatattatcttttttttttttgcctttctgTAATGAATGCTCAGCAAAGTGCCGGTATATAGAAATGCCATTCAATGCAGTAACATAAAAACACCAAGTTCCAGCAATGAAAGGGTTTGTTTCTCCGAAACATTGCATGCTACTTTTCTGTCACTGGttactttttcaaaaacaaactaaactgaaaatgcacaaccttaaaaaaaaaaaaatagcaactTGGTTTTATTTGCCATTAACCCTCCTGTGGAAAAACAGAGCAGAACAATACTGTTACTTATTGCTACTGACCTGTCAttaagttattttgtgttttgtagtatctgattttttttactgaaattgTTTTTGTCTCTAGACCTTCTAGTGACTAGTCATTGGTTTTCCATATGCTATTTAAcattgtacaaaatgttttaaaaaaatgtagggAATCATTGGcaacatttaattgtatgtttgcaCTAAATAAAGGGTGTTCAAGCTTCATGTAAGATTGCGCTTTGCGCTCCAATAAAATTTGTTACTTTATTTGTAAacttaataaacaaatcattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142539 lncRNA downstream 222442 28641129 ~ 28641437 (-) True G113823
TU142514 lncRNA downstream 456040 28407406 ~ 28407839 (-) True G113799
TU142419 lncRNA downstream 787588 28059128 ~ 28076291 (-) False G113724
TU142420 lncRNA downstream 803287 28059128 ~ 28060592 (-) True G113724
TU142418 lncRNA downstream 804948 28058719 ~ 28058931 (-) True G113723
TU142623 lncRNA upstream 204361 29072181 ~ 29074799 (-) True G113905
AMCG00006955 mRNA downstream 52400 28750262 ~ 28811479 (-) True AMCG00006955
AMCG00006949 mRNA downstream 640292 28217613 ~ 28223587 (-) True AMCG00006949
AMCG00006948 mRNA downstream 719663 28141257 ~ 28144216 (-) True AMCG00006948
AMCG00006940 mRNA downstream 816803 28016663 ~ 28047076 (-) True AMCG00006940
AMCG00006941 mRNA downstream 848551 28002502 ~ 28015328 (-) True AMCG00006941
AMCG00006957 mRNA upstream 82 28867902 ~ 28868926 (-) True AMCG00006957
AMCG00006956 mRNA upstream 12497 28880317 ~ 28892493 (-) True AMCG00006956
AMCG00006958 mRNA upstream 34521 28902341 ~ 28906211 (-) True AMCG00006958
AMCG00006959 mRNA upstream 63210 28931030 ~ 28966524 (-) True AMCG00006959
AMCG00006960 mRNA upstream 159592 29027412 ~ 29032897 (-) True AMCG00006960
TU142549 other downstream 51331 28711219 ~ 28812548 (-) True G113833
TU142485 other downstream 571281 28267262 ~ 28292598 (-) False G113775
TU142484 other downstream 571281 28291455 ~ 28292598 (-) True G113775
TU142323 other downstream 1336531 27402600 ~ 27527348 (-) True G113645
TU142176 other downstream 2363198 26500015 ~ 26500681 (-) True G113530

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1512515 False 879 lncRNA 0.38 2 NC_048579.1 72955774 ~ 72956738 (-)