RNA id: TU142612



Basic Information


Item Value
RNA id TU142612
length 365
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G113894
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 29070819 ~ 29071183 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cgcagtttgaatgtttattacaaacacagacatagagagcttacgttctcgagtccagcgaaatggcaaaagaggatgaacctgtgctgatgtcacgttttatagaacaggaagtggaagggacctgttctgagtgatgcgcacaggggccaatggcagctttgataaagtgacgttttgatcacgttcctatggaagtgcgtagaaacccctcccccttgggcaatgcttccAACTTATTAACAAACTTGCCTTCCAAGACTTCCATGCTTGTGTCATTCTTTAGCTTTCCAGCAGACAAGACAGTCacaactacactcacctaaaggattattaggaacaccatactaatactgtgtttgNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142565 lncRNA upstream 201493 28869059 ~ 28869326 (+) True G113847
TU142564 lncRNA upstream 201831 28868726 ~ 28868988 (+) True G113846
TU142552 lncRNA upstream 240754 28829659 ~ 28830065 (+) True G113836
TU142540 lncRNA upstream 423296 28647265 ~ 28647523 (+) True G113824
TU142521 lncRNA upstream 451007 28619006 ~ 28619812 (+) True G113805
TU142651 lncRNA downstream 166020 29237203 ~ 29240687 (+) True G113925
TU142686 lncRNA downstream 254860 29326043 ~ 29326264 (+) True G113955
AMCG00006954 mRNA upstream 215665 28849783 ~ 28855154 (+) True AMCG00006954
AMCG00006953 mRNA upstream 444406 28626138 ~ 28626413 (+) True AMCG00006953
AMCG00006952 mRNA upstream 520359 28546321 ~ 28550460 (+) True AMCG00006952
AMCG00006951 mRNA upstream 576808 28493435 ~ 28494011 (+) True AMCG00006951
AMCG00006946 mRNA upstream 669748 28368124 ~ 28401071 (+) True AMCG00006946
AMCG00006961 mRNA downstream 46394 29117577 ~ 29121806 (+) True AMCG00006961
AMCG00006963 mRNA downstream 103719 29174902 ~ 29177235 (+) True AMCG00006963
AMCG00006962 mRNA downstream 139010 29210193 ~ 29214986 (+) True AMCG00006962
AMCG00006966 mRNA downstream 162463 29233646 ~ 29235193 (+) True AMCG00006966
AMCG00006964 mRNA downstream 164065 29235248 ~ 29238470 (+) True AMCG00006964
TU142014 other upstream 3237877 25815055 ~ 25832942 (+) True G113400
TU141973 other upstream 3452374 25618067 ~ 25618445 (+) True G113369
TU141848 other upstream 4483700 24509003 ~ 24587119 (+) False AMCG00006893
TU141783 other upstream 4734903 24304779 ~ 24335916 (+) False AMCG00006884
TU141703 other upstream 5034707 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile