RNA id: AMCG00006971


Basic Information

Item Value
RNA id AMCG00006971
length 2605
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00006971
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19399 ~ 25092 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGATGGTACAGTCCCCCAGTTCAGCCTGgcAGCTCTGCTGCAGGATTTCCGGGCCCTGCACGAGTCTGTGGAGCAGGCTGGGCTGTTCAAGGCTGACTTCTGGTTTTTCTGGCTGCACCTGGGCCACATtctgctgctggagctggggGCGCTGGGGCTGCTGTGGACCTTCGtgtgtaacagtgtgtttctgtttgtgttgcagtacGGAATTAAGAAGCTGAAGTACCTGCCCTATAACTACCAGCATCAGTACTTCTTCCTCAtTGGACCCCCTCTCCTGATTCCAGTTTACTTCCACATCCAGATCGTCCAAACCATGATCTCCCGGCGGGACTGGGTGCTGGCTGCCACCTGCAACATCGAGCAGAGCCTCTTCAACGACTGGTTTAGTGGGCACCTCAACTTCCAGATCGAACACCAtctgtttCCCATGATGCCCAGACACAATTACTGGCGCGTGGCCCTGCAGGTGCGGGAGCTATGCGAGAGACATGGAGTGCCGTACCGCGTCAAGGGGCTTTGGCAGGGCTTCACTGACATCGTCAGcTCCCTGAGGACGTCTGGAGATCTGTGGCTAGATGCATACCTCCACAAATAATCCTGCCCACCccatccatctgtctgtctgtccatctgtttgTCTTCCTTTCCTAGCTCTTAAAGCACAACACCCACTCCAATCCAATCAAACAGCTGAGCAATCAAGACATTTTGCTTTTAAGCAATTAGGCAATCACTCAGTGCCAGTCAATAGAGCAGCTACTGACCCTTTTACAACAgccagagagaggagggaagaCAGGGATTATCTGTTCATAAAGTTTCCACTCATATATCAATAATCAGGGCTGTGATTGGCTAGACAATGTACCCTCTCATCTGATCAGGTGCTGTAATTGGCTTGTTTGCtcctttgtattttataatgaatcCTGTTAATTACCCCAGCCCCCACACCCCCTCGTTTTACAGAGTCCCATCAGTGGCTTAGCCACTCCTACGTCCTGTCATGTGTCACAGCAGGCTGTGTGTCATTAGCCAGTCAGTCTCCTGGACAGGAAACAAGAAGCTGGACACATTTCTGCCTTCTCTGCAGCCCCAGTGGCTGTGTAGTCTTTGATAGTTTCTCTCGAATGTATTAATACTGAGACTAATTTAACTATGCGGTTATTTAACGAGGAGTGTgggtctgtatgtgtgtgttttgggtgtatttgtattttgtttaaaatacacagttttaGTAATCCTGTCTGTCACAGTGCAGTGAGAGCGACTGCTTCTCTGGAAGGTGTCCATTTTGTTTCAAAGTGACGACCCCTGCTCAAGCCctggggtcaaaggtcagaggGCCAGAAGCCGGGAGTCCCACTGCttgcctctctctttctccacaTCCTCTGGCACAAAGAGAGgatgagaaagagagggagggtggCTCCCAGCCCCAGCCCTCTCGCCTTCTGTACCAAACCCGTCTCTCCGGGCTCTAGTGCTGTGTCAGTCTCTCTAACACTGAGCCTCTGCCATCTTAGAGAGGGGCTCAAACGGCCAAGAGGGGACGTCCCCACCCAGCATGGTTGCCTCAGATTCGATAgcagagtgaaaaacaaaaaaaaaaatcaaatacaaaaaaacaataatacatagtTATagagtaatatatataaaaagaaacacgTCAGTAGGATATGCAATACATTTgataaggaaaaaaagaaatacaatttaaactgaTTCTTCGGTCTTAGATCTTTAGAATGTTGTCACTGtggcacagtgacacactgacacactgacacccacacTGACAGTCACACTGACACccacactgacgcactgacagtcacactgacacccacactgatgcactgacagtcacactgacacccacactgacgcactgacacccacactgatgcactgacagtcacactgacacactgacacccacactgatgcactgacagtcacactgacacccacactgacagtcacactgacacccacactgacacccacactgacgcactgacacccacactgatgcactgacagtcacactgacgcactgacacccacactgatgcactgacagTCACACTGACAGTCACTCTGATACACTGACACCCACAATGACGCACTGACAGTCACACTGATAGTCACTCTGATGCTCTGATACCCACACTGATGCACTGAAagtcacactaacacacacagacagacacaccaacacacacaaagacatgaGATTACAGTGAAGCAGAaagtttgtgagagagagagacagacagagagggagagaaagcaaTCGTGAGAGAGATGGGATGGAAGAAAACAGGACccttacagacagacagaaggacagacacacagacagcccgtgtttgtgtgtcagtgtgtgtgtgtgttatgctTACAGTGCTGAGTAATAATAAGATcatttcaaattacaattttcaattttttttaaatgtctgtctgtgtctgggagagagggggggttcTTCATATGATGGTTACGCACAGGACTTAACTGCCCACCCACCTTAGACAAAGAtagaataaacaacaataaacaagcaaaacaatttaaa

Function

GO: NA

KEGG:

id description
K10226 FADS2; acyl-CoA 6-desaturase (Delta-6 desaturase)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25332 lncRNA upstream 142842 167934 ~ 182823 (-) True G20353
TU25336 lncRNA upstream 158665 183757 ~ 188858 (-) True G20355
TU25385 lncRNA upstream 233999 259091 ~ 259480 (-) True G20395
TU25406 lncRNA upstream 279497 304589 ~ 306860 (-) True G20412
TU25427 lncRNA upstream 282917 308009 ~ 309826 (-) True G20424
AMCG00006974 mRNA downstream 17257 593 ~ 2142 (-) True AMCG00006974
AMCG00006972 mRNA upstream 15431 40523 ~ 48351 (-) True AMCG00006972
AMCG00006982 mRNA upstream 30500 55592 ~ 57428 (-) True AMCG00006982
AMCG00006980 mRNA upstream 41663 66755 ~ 78412 (-) True AMCG00006980
AMCG00006979 mRNA upstream 53360 78452 ~ 95292 (-) True AMCG00006979
AMCG00006977 mRNA upstream 88085 113177 ~ 125163 (-) True AMCG00006977
TU25378 other upstream 205232 230324 ~ 232494 (-) True G20388
TU25387 other upstream 234491 259583 ~ 260236 (-) True G20397
TU25464 other upstream 335601 360693 ~ 362074 (-) False AMCG00006997
TU25476 other upstream 383747 408839 ~ 414126 (-) True AMCG00007001
TU25694 other upstream 820837 845929 ~ 848289 (-) True G20609

Expression Profile