RNA id: AMCG00006974


Basic Information

Item Value
RNA id AMCG00006974
length 489
RNA type mRNA
GC content 0.70
exon number 3
gene id AMCG00006974
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 593 ~ 2142 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCTGTGGCCGGTTGCTGGACCGTGTTCTGGGCTGTGCGAGCTCTGTGTCGCTCTGGACTCGTCCAAGGCTCTGGGTCCCGGCCCGGCTGGAGAGATGTGCGGCTCCGAGGAGCGCCCGGCGCTGCAGCGGCTCACCTGGGCCGAGGTGCGGGAGCGCGGCGGCGGCCGCGGGTGCGAAGGGCACTGGCTGGTGATTGACAGGAAGGTGTATGACGTCACCAACTTTAGACTACGTCACCCTGGAGGACCGAGGCTGCTGGCGCACTACGCCGGGCAGGACGCCACGcTGTCTCTGGTGGAGGATTTCCGGCGGCTGCGGGCGGTGGTGGAGGGGGCGGGGCTTCTGAGGCCACGCCCCTGGTTCTTCGCGGCGGTTCTGGCCCACATCCTGGTGCTGGACGGGCTGGCCTACCTCACCCTGAGGCTGGGGGGCACCTCCTGGCCGGCACTGACCCTCACCGCCCTGCTGCTGGCCACCGTGCAG

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25332 lncRNA upstream 165792 167934 ~ 182823 (-) True G20353
TU25336 lncRNA upstream 181615 183757 ~ 188858 (-) True G20355
TU25385 lncRNA upstream 256949 259091 ~ 259480 (-) True G20395
TU25406 lncRNA upstream 302447 304589 ~ 306860 (-) True G20412
TU25427 lncRNA upstream 305867 308009 ~ 309826 (-) True G20424
AMCG00006971 mRNA upstream 17257 19399 ~ 25092 (-) True AMCG00006971
AMCG00006972 mRNA upstream 38381 40523 ~ 48351 (-) True AMCG00006972
AMCG00006982 mRNA upstream 53450 55592 ~ 57428 (-) True AMCG00006982
AMCG00006980 mRNA upstream 64613 66755 ~ 78412 (-) True AMCG00006980
AMCG00006979 mRNA upstream 76310 78452 ~ 95292 (-) True AMCG00006979
TU25378 other upstream 228182 230324 ~ 232494 (-) True G20388
TU25387 other upstream 257441 259583 ~ 260236 (-) True G20397
TU25464 other upstream 358551 360693 ~ 362074 (-) False AMCG00006997
TU25476 other upstream 406697 408839 ~ 414126 (-) True AMCG00007001
TU25694 other upstream 843787 845929 ~ 848289 (-) True G20609

Expression Profile