RNA id: AMCG00006978


Basic Information

Item Value
RNA id AMCG00006978
length 601
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00006978
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 140536 ~ 143181 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTACATttgatatagatatacagatatCCACACTGTACAAATGTACCCGCATCCATGCCTCTACACAGTCCTACACGTATAAATGCACACTTGGAGAAAATGATACTCCCATAGTGCTTGGCTATAGCCGTCACCAGATATCAGTGTAGCACGAATCAGTCCGGACCGAGGGGCAGTCTGTGCTCACACAGCTGTGTGGCTCAATACCGCGGGACAGACCGACCATTGTGCCGTAGTGTGCTGTAACTGTCAGGGATCGTGTGTTAAATTGCTGCTGGGTGTCAGTCAGTGATTGTTTAATTGTGTCGGTGATAGTGTTTAATTGCAGCggtgtcagtcagATGCGTTACGTAGCTGCCTACCTGCTGGCCGCTCTGGGCGGAACCGACAGCCCCAACTCTAAAGACCTGAAGAAGATCTTGGACAGCGTTGGCATTGAGGTGGACGACACACGCATGGACAAGgctatGGGAAGCTGGCCAGTGTTCCTGCAGGGGGCGCTGTGGCCGTGTGCAGCTCTGCTACCGCCGGAGGAGCTGCTGCCCCCGCTGCCGAAGTGCATGCTGGGATACTGCGCCACAAAGCCCGTGGACCTGTAA

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25332 lncRNA upstream 24753 167934 ~ 182823 (-) True G20353
TU25336 lncRNA upstream 40576 183757 ~ 188858 (-) True G20355
TU25385 lncRNA upstream 115910 259091 ~ 259480 (-) True G20395
TU25406 lncRNA upstream 161408 304589 ~ 306860 (-) True G20412
TU25427 lncRNA upstream 164828 308009 ~ 309826 (-) True G20424
AMCG00006981 mRNA downstream 2803 127488 ~ 137733 (-) True AMCG00006981
AMCG00006977 mRNA downstream 15373 113177 ~ 125163 (-) True AMCG00006977
AMCG00006979 mRNA downstream 45244 78452 ~ 95292 (-) True AMCG00006979
AMCG00006980 mRNA downstream 62124 66755 ~ 78412 (-) True AMCG00006980
AMCG00006982 mRNA downstream 83108 55592 ~ 57428 (-) True AMCG00006982
AMCG00006988 mRNA upstream 52123 195304 ~ 198829 (-) True AMCG00006988
AMCG00006987 mRNA upstream 82914 226095 ~ 241460 (-) True AMCG00006987
AMCG00006995 mRNA upstream 174435 317616 ~ 328711 (-) True AMCG00006995
AMCG00006997 mRNA upstream 213437 356618 ~ 362294 (-) True AMCG00006997
AMCG00006996 mRNA upstream 222809 365990 ~ 379890 (-) True AMCG00006996
TU25378 other upstream 87143 230324 ~ 232494 (-) True G20388
TU25387 other upstream 116402 259583 ~ 260236 (-) True G20397
TU25464 other upstream 217512 360693 ~ 362074 (-) False AMCG00006997
TU25476 other upstream 265658 408839 ~ 414126 (-) True AMCG00007001
TU25694 other upstream 702748 845929 ~ 848289 (-) True G20609

Expression Profile