RNA id: AMCG00006980


Basic Information

Item Value
RNA id AMCG00006980
length 2283
RNA type mRNA
GC content 0.66
exon number 18
gene id AMCG00006980
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 66755 ~ 78412 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCCCAGTTACAGACGTGTGGTCAGCCGCAGCGATGAACTCATTGCTGAGCTCCACTGGCGCGCTGATGCACCTGTTCGAGGGGAAGCTGCAGGAACTGGTGCGTGAGATCGACGACACACACATGGTGTGGCTGGAGGAGATCCAGCAGGAGGCCAGCCGCATGTTCTCCAGtgattTCAGCGCAGAGCCAGAGCTGATGCCCAAGACTCCCTCTCAGAAGCGGACGGGCCGGCGCGGGCGAGTGTCTGTGGGCCGGGACGAGAACCAGAACCGCCACCGGTTCTCTAAAGGGAAGCGCAGTAACCTGCGGCGCTCCTCGGCCCGCAGGTCCATGGTCCTGCAGCTCATCCCCGAGGCCGAGGGGGGGGCCCGGCCCAAACGCAGCACGCGCAGAGCCAAGCCAGAGGTCCCCCTGTGCGCACGCAGCACACGCCAGGCGGCAACggccgaggaggaggaggtggaggaggtggaggaggtggaggaggaggagtgggagAAGCAGGGGGCCCGTCCGAAGCACGGCAACCCCCTCCCCGCTGCCGCAGAACCGGACCTGGGAGGGGAGGAGGTGAAGGGagcagagggggaggagggggtctcCAAGGATGCCCCCCCCCTGCCCCAAGCAGCCACGCAGGCAgtgcctgcccccccccctcaggACCCCAAGCTAGCGCTGATCCAGATCTCGGCCACGGACCGCCTGTCAGCCGAACAACACCTGCGGCTGGAGGGGCAGGAGTGTGAGGGCGAGGAGGGGCCGGAGGCAGCTGAGGGGCTGCGGTCCATGTCCAAACTAGCCATCGCCGGCCCGGACCTTGAGCCCCCCACGCCCCGCGCTCCCCCACGCCACTCCGTGTCCTCGGCACGCCGCTCCCTCACCCTGCGACGCTCGCTGGCCGGCCTGAGACACAGCCTCACCCAGCAGGCGGTGCGCCGTGCCTCCCGCCGGTCCTGCCTGCGCAGCCGCTCCCGGCACTCGCGCTCCTCCAGCACGGCCAGCGGGGACGTGTGCATCGAGACGGACGAGGAGGATGGAGAGCAGCCTGAGCAGCCAGCTGTACTGGAGACCACTAGCCCCCCACCGGCAGAGGAAGTGCCAGAGgtgtCGACCGAGGGTGGGGCTCTAGTGACTCGAGCCACACGCAGCATCGCACGCGCTCAGACGCAGACCCCCGTCTCCACAGAGAGTCCCCCCGATGGTCTCACAGACCCCCAGCTGGATGAGTTCTCTAGCCCCCGCAAGAAGATCAGCCCCCCCAAGAAGAGCCAGAGTAGGAACCAGCTGCTCATGATGACCCCGGGCTCAGTGGGCCGCACTTCTGTCATCAAATCCTTCCTCAAGCACGCTACGCCGCTGCGCACCGACCCCAAGGAGAGGGAGCGCCAGCGTCTGGAAGCTCTGAAGAAGAAACAGGAGCAGGAGgtggagaggaagaagaagatggAGGAGGACAAGAGGAAGAGAGTGGAGGAGCTCAAAAAGAAGCGGGACGAGCGGCTGCGCAAGGTGGTCGaggcgcgagagagagaggagcagaaggaggaggagaagaagaagaagattgaGCAGAAGCTGGCGCAGATTGAGGAGAAGAATGACAAGCTGCGGGTGGAGCGCCAGGCGGAGGAGAAGGCCAAGCGCAAGGTGGCATCGCGGCgccaggaggagctggagcagcgCCGGCGCCAGGAGGAGGAGGCCCGCCGCCGCAAGATCCAGCAGGCGgaggaggaggagcgccGGCAGCAGGAGGCGCTGGCCCGGCGGCGTGCGGAGGAGGAGCAGGACCGAGTCCGGAGACAGGCGGAGACGCGGCGCGCacaggagcagagagagagggagcCGCTGCAGAGGGAGGTAGAGAAGGCGGCTCGAGAGAAGCAGCAGAGAGAGGcggaggagaagaggaagaagGAGGAGGGTCAGAAGAAGGCCACTGCAGTCAAGGTCCTCAACATCACTGTGGACATGCAGGATGACAGCACCCCGCAGCCGGAGGCCCCCGCTCACCCTGCCATCAACATCACCTTTGACTCCCAGGCCAGCGGGccgtCTCAGCTGAAGACTCCAGTAGgaaaggctgctgctgctgctctcaaTGTGACTGTGGATGTGGAGaACTCCCCCCAGTCATACCAGATCACCCCTAAGGGAGGGAATCGCCCGGTCAACATAAGTACCAACCCTGAGGATTATGGGATGGACCAGAACAGCGACGACTCGACGGATGACGAAGGGGCGCCACGGAAACCCATCCCCTCCTGGGCTGAa

Function

GO: NA

KEGG:

id description
K11515 INCENP; inner centromere protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25332 lncRNA upstream 89522 167934 ~ 182823 (-) True G20353
TU25336 lncRNA upstream 105345 183757 ~ 188858 (-) True G20355
TU25385 lncRNA upstream 180679 259091 ~ 259480 (-) True G20395
TU25406 lncRNA upstream 226177 304589 ~ 306860 (-) True G20412
TU25427 lncRNA upstream 229597 308009 ~ 309826 (-) True G20424
AMCG00006982 mRNA downstream 9327 55592 ~ 57428 (-) True AMCG00006982
AMCG00006972 mRNA downstream 18404 40523 ~ 48351 (-) True AMCG00006972
AMCG00006971 mRNA downstream 41663 19399 ~ 25092 (-) True AMCG00006971
AMCG00006974 mRNA downstream 64613 593 ~ 2142 (-) True AMCG00006974
AMCG00006979 mRNA upstream 40 78452 ~ 95292 (-) True AMCG00006979
AMCG00006977 mRNA upstream 34765 113177 ~ 125163 (-) True AMCG00006977
AMCG00006981 mRNA upstream 49076 127488 ~ 137733 (-) True AMCG00006981
AMCG00006978 mRNA upstream 62124 140536 ~ 143181 (-) True AMCG00006978
AMCG00006988 mRNA upstream 116892 195304 ~ 198829 (-) True AMCG00006988
TU25378 other upstream 151912 230324 ~ 232494 (-) True G20388
TU25387 other upstream 181171 259583 ~ 260236 (-) True G20397
TU25464 other upstream 282281 360693 ~ 362074 (-) False AMCG00006997
TU25476 other upstream 330427 408839 ~ 414126 (-) True AMCG00007001
TU25694 other upstream 767517 845929 ~ 848289 (-) True G20609

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000127_01865774_01877178.mRNA True 2622 mRNA 0.51 19 CI01000127 1865774 ~ 1877244 (+)