RNA id: AMCG00006981


Basic Information

Item Value
RNA id AMCG00006981
length 696
RNA type mRNA
GC content 0.64
exon number 5
gene id AMCG00006981
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 127488 ~ 137733 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCCCTCTGGACTCTCCCTGGAACATCTCCTTTGCCGGCTGCGGGTTCCTGGGGATCTACCACATCGGCGTGGCCAGCTGCCTGCAGGAACAGGCGCCCTTCCTGCTGATGCGTGTGTTGTTGTACCGTACGCTACCCcccaattcacacacacacgccaccGGGCGCCTGGGCATCTCCCTCACACGCGTGTCCGACGGCCAGAACTTTCGGGGACCCCAGCACAGCCTGATCCCccggggagagggggaggagaagcaggaggaagagaaggaaaaggaggaagaggaggaggaaggggaagaAGGGCAGATGGAGAAAGATGGAGGGATGAAGCCAGAGGAGAGGAGGGCGAAGGAGAGCGAGGGAGCAGCCGGAGGAGAGCAGCACATCTTTGAGCACCTGCCCCCCCGACTACACAGAgCCCTAGTGGAGGCGTGTGCGGAGCGGCGCAGTGTGTTCCACCTGCTGCCCGGCTGGGTGGGAGGCAGCGGATCGGTTCTGGACCTGATGATGAAGCTGGACCAGTACCAGCGCCAGCTGCTCCCGGGAGTGCTCTGCATCAACCTTGACCTGCAGGCGTCACTGTACACCCAGCCCTTGACCCCGGAGCAGCCAGAGGAGCCGGAGGAGCTGGGGGGCCTGGAGATGAGGCCCCTGCCTCCCCCCTCTGCACCCCCTGTGCTCCCCTAG

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25332 lncRNA upstream 30201 167934 ~ 182823 (-) True G20353
TU25336 lncRNA upstream 46024 183757 ~ 188858 (-) True G20355
TU25385 lncRNA upstream 121358 259091 ~ 259480 (-) True G20395
TU25406 lncRNA upstream 166856 304589 ~ 306860 (-) True G20412
TU25427 lncRNA upstream 170276 308009 ~ 309826 (-) True G20424
AMCG00006977 mRNA downstream 2325 113177 ~ 125163 (-) True AMCG00006977
AMCG00006979 mRNA downstream 32196 78452 ~ 95292 (-) True AMCG00006979
AMCG00006980 mRNA downstream 49076 66755 ~ 78412 (-) True AMCG00006980
AMCG00006982 mRNA downstream 70060 55592 ~ 57428 (-) True AMCG00006982
AMCG00006972 mRNA downstream 79137 40523 ~ 48351 (-) True AMCG00006972
AMCG00006978 mRNA upstream 2803 140536 ~ 143181 (-) True AMCG00006978
AMCG00006988 mRNA upstream 57571 195304 ~ 198829 (-) True AMCG00006988
AMCG00006987 mRNA upstream 88362 226095 ~ 241460 (-) True AMCG00006987
AMCG00006995 mRNA upstream 179883 317616 ~ 328711 (-) True AMCG00006995
AMCG00006997 mRNA upstream 218885 356618 ~ 362294 (-) True AMCG00006997
TU25378 other upstream 92591 230324 ~ 232494 (-) True G20388
TU25387 other upstream 121850 259583 ~ 260236 (-) True G20397
TU25464 other upstream 222960 360693 ~ 362074 (-) False AMCG00006997
TU25476 other upstream 271106 408839 ~ 414126 (-) True AMCG00007001
TU25694 other upstream 708196 845929 ~ 848289 (-) True G20609

Expression Profile