RNA id: AMCG00006988


Basic Information

Item Value
RNA id AMCG00006988
length 618
RNA type mRNA
GC content 0.64
exon number 6
gene id AMCG00006988
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 195304 ~ 198829 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGCGCTCCAGCACTGACGAGTCTCCGTACCGCCGCAGCCCTTCCCTAGACAGCAAGCCCGGCTCGCCACCCCCCTGCACCTTCCGCCGCTGCAGCAGCCCCTCCGCCGGCCTGGGCTTTGGCCCGCCCCACGCCCCCCCCGCCGCCCAGGGCAAGTGCAGCTCCCCCAAGGGCAACCGCTACGTActgGGGGGCTGTGGGGTGCTGGGAGTGGGGATCTGGCTGGCTATAGACCACTATGCCCAGGCCGAGCTGCAGAGGGGGCTGCATCTGTTCGGCAGTGAGGGGAACGTGGGGCTGACCAACGCCTGGAGCATCATCCAGACCGATTTCCGGTGCTGTGGCGTGTCCAACCACACAGACTGGTTCCCTGTGTACAACACCACACGCGTGCCCGACTCCTGCTGCCAGGAGCACAGCCTGGACTGTGGCCTGGAGCAGCCCGGGACATGGTGGACTGAGccctGCTATAAGAAGGTGAAGATGTGGCTGCAGGAGAATCTGCTGGGTCTGTGGATCTCTGCTCTGTGTACAGGATTGACACAGgtgctgGCTCTGGCATTCTCGATGGTATTGTTCTGTCAGGTGGTCAAGTCTGACACATTCTACACGTAG

Function

GO: NA

KEGG:

id description
K17294 TSPAN4; tetraspanin-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25336 lncRNA downstream 6446 183757 ~ 188858 (-) True G20355
TU25332 lncRNA downstream 12481 167934 ~ 182823 (-) True G20353
TU25385 lncRNA upstream 60262 259091 ~ 259480 (-) True G20395
TU25406 lncRNA upstream 105760 304589 ~ 306860 (-) True G20412
TU25427 lncRNA upstream 109180 308009 ~ 309826 (-) True G20424
TU25417 lncRNA upstream 111884 310713 ~ 317114 (-) True G20423
TU25419 lncRNA upstream 111884 310713 ~ 317114 (-) False G20423
AMCG00006978 mRNA downstream 52123 140536 ~ 143181 (-) True AMCG00006978
AMCG00006981 mRNA downstream 57571 127488 ~ 137733 (-) True AMCG00006981
AMCG00006977 mRNA downstream 70141 113177 ~ 125163 (-) True AMCG00006977
AMCG00006979 mRNA downstream 100012 78452 ~ 95292 (-) True AMCG00006979
AMCG00006980 mRNA downstream 116892 66755 ~ 78412 (-) True AMCG00006980
AMCG00006987 mRNA upstream 27266 226095 ~ 241460 (-) True AMCG00006987
AMCG00006995 mRNA upstream 118787 317616 ~ 328711 (-) True AMCG00006995
AMCG00006997 mRNA upstream 157789 356618 ~ 362294 (-) True AMCG00006997
AMCG00006996 mRNA upstream 167161 365990 ~ 379890 (-) True AMCG00006996
AMCG00007001 mRNA upstream 210063 408892 ~ 413978 (-) False AMCG00007001
TU25378 other upstream 31495 230324 ~ 232494 (-) True G20388
TU25387 other upstream 60754 259583 ~ 260236 (-) True G20397
TU25464 other upstream 161864 360693 ~ 362074 (-) False AMCG00006997
TU25476 other upstream 210010 408839 ~ 414126 (-) True AMCG00007001
TU25694 other upstream 647100 845929 ~ 848289 (-) True G20609

Expression Profile