RNA id: AMCG00006996


Basic Information

Item Value
RNA id AMCG00006996
length 1488
RNA type mRNA
GC content 0.60
exon number 15
gene id AMCG00006996
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 365990 ~ 379890 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcAGTTCACGAGCCCTCTACACAGCAATACACTCTTTGCACCCTGTCACAGttcacacactacacacagcgCACACAGTCTGCTTACAGTGTGTATCTGCGGGAGAGGAGTCAGTCCACCACTCAGAATGTCCCGGCACCTGGGGTGGCTCGTTCCGACAGCAAGCTCAGTGCCAAGGCCCTGTATGagCAGAGGAAAAAGTACTCCAACTCCAACATCATCATGCAAGAGACATCACAGTACCATGTGGAGcACCTCTCCACATTCGTGATGGACAAGAGTGAGTCCATCGCCACCGTGGACGACGCTGTGAAGAAGCTCATTCTGCTCGACTCAAAAGACAAGATCTGGACGCAGGAGATGCTGCTGCAGGTCAGCGACTCGGCCATCCGCCTGCTGGACTGCGACTCACAGGCGGAGATGGTGCACGCTGACATAGACAGCGCCCTGGGGGACAGTAAACACGGGAAGAAGATGCGTCCACAGACCCTGAAGGTGAACCAGGAGAAGATGAAGCGACGACGTGAATCCATCCTGCCGCCCAGCCCCGCCCCCAGCCACGCCCGACCCAGGGGGAAAGGTCGTGCCAAACTGAGGAAGCACATCCAGAACCCCAGCGCAGCAGAGCTcatccacttcctgtttggaCCCCTGGagatgGTGCTGCAGAGCTGCGGGGGGCCGGAGGTGGCACAGTCAGTGCTCAGCCCCCTGCTGTGCCGAGAGGCCGTGCAGTTCCTGCGGGGGCACCTGTCCCCCACGGAGACCAGCCTGTACGAGCTGCTGGGGGACGCCTGGACACGCCCTCGGGCTGATTGGCCAAGGGATCAGTATGTCCCGCCCTACCATCCCAAGTTCCGGAATGGCTGGGAGCCGCCGGCAGAGCTGTTCCGGGGCGTTGCCTGGGAAACAGAGGGGTCAGCCCCACTCACCCCCACACCTGAGTACAGGAGGAAGCCTTCAACCGATgagACCTGCGGATGGTCAGGATCCAGCTTTGACTtaAGTTTCGACTCCTCCCTCAGTAAGCCAAAGAAATACGTTAAGATTCGCTATCACTTCGTGGCCAGAAACGCCAATGAGCTGTCAGTGCTGCAGGACGAGGTGctggagGTGCTGGAGGATGACAAGCAGTGGTGGCTGCTGCGTAGCCGCATTGGGCAGGCGGGGTACGTGCCCTACAACATCCTGGACATCGTCAAGCTGGAGGAGCATGGCCTGCCTGAGCCTCTGTACAGCCAGCCCCCCCCACGCAACTTCAGAGTGGAACGCCCTGCCAGCGCCCTCCCTCTGGCCTTCGACTCACCCCCTACGCAGCTCTTCTCCCTCAATAAGGAGGAGCTGCGGAAGGTGTGCGGGGAGGAGGGATCGCGTGTCTACAGCCAGGTCACCGTGCAGAAGGCCCAGCTGGAGAAGAGCCGTGGAGACTCTGAGCTGCAAGAGATCATGAAGAGACAGCAAGAGAGAATCAACTCCACCTCACAGGAC

Function

GO: NA

KEGG:

id description
K17277 EPS8; epidermal growth factor receptor kinase substrate 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25456 lncRNA downstream 12519 346274 ~ 353471 (-) True G20446
TU25419 lncRNA downstream 48876 310713 ~ 317114 (-) False G20423
TU25486 lncRNA upstream 43444 423334 ~ 424778 (-) True G20465
TU25527 lncRNA upstream 166166 546056 ~ 546501 (-) True G20501
TU25534 lncRNA upstream 208435 588325 ~ 588602 (-) True G20507
TU25537 lncRNA upstream 215587 595477 ~ 595770 (-) True G20510
TU25686 lncRNA upstream 439085 818975 ~ 823764 (-) True G20604
AMCG00006997 mRNA downstream 3696 356618 ~ 362294 (-) True AMCG00006997
AMCG00006995 mRNA downstream 37279 317616 ~ 328711 (-) True AMCG00006995
AMCG00006987 mRNA downstream 124530 226095 ~ 241460 (-) True AMCG00006987
AMCG00006988 mRNA downstream 167161 195304 ~ 198829 (-) True AMCG00006988
AMCG00006978 mRNA downstream 222809 140536 ~ 143181 (-) True AMCG00006978
AMCG00007001 mRNA upstream 29002 408892 ~ 413978 (-) False AMCG00007001
AMCG00007002 mRNA upstream 84679 464569 ~ 472311 (-) True AMCG00007002
AMCG00007003 mRNA upstream 93968 473858 ~ 478272 (-) True AMCG00007003
AMCG00007004 mRNA upstream 108765 488655 ~ 509749 (-) True AMCG00007004
AMCG00007009 mRNA upstream 173425 553315 ~ 554154 (-) True AMCG00007009
TU25464 other downstream 3916 360693 ~ 362074 (-) False AMCG00006997
TU25387 other downstream 105754 259583 ~ 260236 (-) True G20397
TU25378 other downstream 133496 230324 ~ 232494 (-) True G20388
TU25476 other upstream 28949 408839 ~ 414126 (-) True AMCG00007001
TU25694 other upstream 466039 845929 ~ 848289 (-) True G20609
TU25695 other upstream 466039 845929 ~ 848289 (-) False G20609
TU25696 other upstream 466039 845929 ~ 848289 (-) False G20609
TU25697 other upstream 466039 845929 ~ 848289 (-) False G20609

Expression Profile