RNA id: AMCG00006997


Basic Information

Item Value
RNA id AMCG00006997
length 876
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00006997
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 356618 ~ 362294 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCAATCTCGACACAAATAAAGACGGGGGAGTCGACACTGAAGGAAGTACCCTAATTCATCACAACGACAACATAAACTACATCAATAACGATCATATAACCACAACACGTATAAgatacaacatttaaaagtgaTACAAGTACAGTTAAAGCTGTTATTTGTTTGAAGAGCGTCCTCGGTCCCCCCCCTCGCGTGTAGTGCTCTCTGCCGCATTGTGGCGCATGCGTGCGGACGCTGAGTGGCTGCGCGGTGGTGTGTGAGGACCAGCGGCTTTTATATCACAACTACAGCATTTATATCAAAACTGCACCGTTTATATCACAACCACATCTAATCTCAATAACACAGCCGTGTGTTTCTGGACTGGAGCTCCTGTCTGCACAGAGGTTTATTCGTGTGCCGCCTGTTTCCCGGCGCAGGTTGCGAGTCTGTCCTGAGACCCGAGTCCGAGACGATGATTATCCCAGTGCGGTGCTTCACCTGCGGGAAGATCGTGGGCAACAAGTGGGAGGCGTACCTGGGGCTGCTGCAGGCCGAGTACACCGAGGGGCGGGCCGGGCTGGACATCAGTAGTGCACAGAGTTcagcaggaccagggctggagccCAGACACTGCacggagagggggaggggtgcgGCAGCAAGAGAACACAAGACAGAAGAGGAAGTGAGatacagaggaggaggaagagggaacAAGAGGAAGAGACAGACAGCTGTGCGGGTCACTGTCGGGGCTCTAGTGGTCGCTCCAGAGGACGGCTCAGCCTTCAAACTGCGGTACAGACAGCAGGCGATGCCGATGCCCACGGCCCCGATGATCTTCAGGTGCTCTAGGATGAACTTTTCCAGCTTTGTGATGCAGccgccctga

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0006356 regulation of transcription by RNA polymerase I biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0006385 transcription elongation from RNA polymerase III promoter biological_process
GO:0006386 termination of RNA polymerase III transcription biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0050434 positive regulation of viral transcription biological_process
GO:0032481 positive regulation of type I interferon production biological_process
GO:0006283 transcription-coupled nucleotide-excision repair biological_process
GO:0005829 cytosol cellular_component
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001055 RNA polymerase II activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03007 RPB10, POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25456 lncRNA downstream 3147 346274 ~ 353471 (-) True G20446
TU25417 lncRNA downstream 39504 310713 ~ 317114 (-) True G20423
TU25486 lncRNA upstream 61040 423334 ~ 424778 (-) True G20465
TU25527 lncRNA upstream 183762 546056 ~ 546501 (-) True G20501
TU25534 lncRNA upstream 226031 588325 ~ 588602 (-) True G20507
TU25537 lncRNA upstream 233183 595477 ~ 595770 (-) True G20510
TU25686 lncRNA upstream 456681 818975 ~ 823764 (-) True G20604
AMCG00006995 mRNA downstream 27907 317616 ~ 328711 (-) True AMCG00006995
AMCG00006987 mRNA downstream 115158 226095 ~ 241460 (-) True AMCG00006987
AMCG00006988 mRNA downstream 157789 195304 ~ 198829 (-) True AMCG00006988
AMCG00006978 mRNA downstream 213437 140536 ~ 143181 (-) True AMCG00006978
AMCG00006981 mRNA downstream 218885 127488 ~ 137733 (-) True AMCG00006981
AMCG00006996 mRNA upstream 3696 365990 ~ 379890 (-) True AMCG00006996
AMCG00007001 mRNA upstream 46598 408892 ~ 413978 (-) False AMCG00007001
AMCG00007002 mRNA upstream 102275 464569 ~ 472311 (-) True AMCG00007002
AMCG00007003 mRNA upstream 111564 473858 ~ 478272 (-) True AMCG00007003
AMCG00007004 mRNA upstream 126361 488655 ~ 509749 (-) True AMCG00007004
TU25387 other downstream 96382 259583 ~ 260236 (-) True G20397
TU25378 other downstream 124124 230324 ~ 232494 (-) True G20388
TU25476 other upstream 46545 408839 ~ 414126 (-) True AMCG00007001
TU25694 other upstream 483635 845929 ~ 848289 (-) True G20609
TU25695 other upstream 483635 845929 ~ 848289 (-) False G20609
TU25696 other upstream 483635 845929 ~ 848289 (-) False G20609
TU25697 other upstream 483635 845929 ~ 848289 (-) False G20609

Expression Profile