RNA id: AMCG00007002


Basic Information

Item Value
RNA id AMCG00007002
length 948
RNA type mRNA
GC content 0.59
exon number 8
gene id AMCG00007002
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 464569 ~ 472311 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCCCTGCAACAAGGAGGGCCAGGTCCTGGTCACCCTGCCCATGGATGGCAACACCTGCTGCAACATCACCAAGTGCGagTGTGACCGGAGCCGCTGCACCAGGCCAGAGGAAAGCTGTGAGGCCGGGTTCCAGCCAGTGGCCACGAGCTCAGAGAACAGCTGCTGCCCCATCTACCAGTGTGTGCCCAAGAAGGTGTGTGTCCTGAACGGCACCGAGTACCAGcccGGAGTGATCGTGCCCGTGTCCCTGTGTGACGAGTGTAAATGCGGTTTTGAGATGGACCCCAAGATGCAGCTGCACAGGATGGAGTGCAAGACACAGACATGTGACGAGCACTGTCCTGCGTCTGGAGAGAATGTCACCTTCCCCGGAGACAACTGCATGCACTACCAGTGCTTCATGATTGACGGGCAGTATGTGCCAATCAGCACCAAGAAGGCCTGCCTGGAGTTCCGCCCCGAGGCCTGTGTCCCTgCAGGCCTCAGGCAGATTAGTATCCAAAATGTCAGCAGTGTAGATCCAGAGGGACAGCAGGTGCTCTCGTGTATAGGTGATGAGAAGCCCGAGAGCTGCCGGGTGCAGAAGAAGCCCACCACCATCAGCCATGAGGGTTGTGTGTCCCTGAGCCCTGTGGAGGTGTCCTCCTGCCTGGGGGCCTGCAGCACCTACACCCTGTACTCCTCCGAGGCCAGCTCCATGGAGCACAAGTGCAGCTGCTGCCAGGAGACCCGGACCAGCCAAAGGAACGTCACCCTGCAGTGCGCCAACGGCTCTTCCGCCCCGTACACCTACATCTACATCGAGGAGTGCGCCTGCAAGGACACCCACTGCCAGGGCCAGTACGATGGCCTGCTCCTTAGCCCAGACCAGGGGGGGCAAAAAAAGGGACCAAGAGCAACAGAGACGACAAGGAAGACTGGAGACCAAGGGAAAGAAGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25486 lncRNA downstream 39791 423334 ~ 424778 (-) True G20465
TU25456 lncRNA downstream 111098 346274 ~ 353471 (-) True G20446
TU25419 lncRNA downstream 147455 310713 ~ 317114 (-) False G20423
TU25527 lncRNA upstream 73745 546056 ~ 546501 (-) True G20501
TU25534 lncRNA upstream 116014 588325 ~ 588602 (-) True G20507
TU25537 lncRNA upstream 123166 595477 ~ 595770 (-) True G20510
TU25686 lncRNA upstream 346664 818975 ~ 823764 (-) True G20604
TU25689 lncRNA upstream 356786 829097 ~ 829524 (-) True G20607
AMCG00007001 mRNA downstream 50591 408892 ~ 413978 (-) False AMCG00007001
AMCG00006996 mRNA downstream 84679 365990 ~ 379890 (-) True AMCG00006996
AMCG00006997 mRNA downstream 102275 356618 ~ 362294 (-) True AMCG00006997
AMCG00006995 mRNA downstream 135858 317616 ~ 328711 (-) True AMCG00006995
AMCG00006987 mRNA downstream 223109 226095 ~ 241460 (-) True AMCG00006987
AMCG00007003 mRNA upstream 1547 473858 ~ 478272 (-) True AMCG00007003
AMCG00007004 mRNA upstream 16344 488655 ~ 509749 (-) True AMCG00007004
AMCG00007009 mRNA upstream 81004 553315 ~ 554154 (-) True AMCG00007009
AMCG00007010 mRNA upstream 82763 555074 ~ 565774 (-) True AMCG00007010
AMCG00007008 mRNA upstream 94134 566445 ~ 568523 (-) True AMCG00007008
TU25476 other downstream 50443 408839 ~ 414126 (-) True AMCG00007001
TU25464 other downstream 102495 360693 ~ 362074 (-) False AMCG00006997
TU25387 other downstream 204333 259583 ~ 260236 (-) True G20397
TU25378 other downstream 232075 230324 ~ 232494 (-) True G20388
TU25694 other upstream 373618 845929 ~ 848289 (-) True G20609
TU25695 other upstream 373618 845929 ~ 848289 (-) False G20609
TU25696 other upstream 373618 845929 ~ 848289 (-) False G20609
TU25697 other upstream 373618 845929 ~ 848289 (-) False G20609
TU25698 other upstream 373618 845929 ~ 848289 (-) False G20609

Expression Profile