RNA id: AMCG00007003


Basic Information

Item Value
RNA id AMCG00007003
length 1650
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00007003
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 473858 ~ 478272 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTAACCAGCCCCAGGGAGAGCTCTCCCAGCACACCATGTGTCTGCATCTTTCAAGGGAAGAAGATCAGCCCTGGCAGCTTCATATACAACACAACGGACAGTGCAGGGTGGTGTTACACTGCCTTCTGTAATGCCACCTGTGGGGTTGATAGACATGTGACAGAATGCCACTCCACCACCACTGCCCCGACAACCCCTGCAAAAACAACCACACCTGGAACGACAGCTGCCCCCTCGACTAGAGGAACCCCAGAGACCACCAGCCCTGGAGTGCCCACCAACCCTGCTCCTGAGTGTGCTGCCCTGACACCTCCCCGAAAGCTGAACGAGACGTGGCAGATCGACAGGTGCACCCATGCCACCTGCCAAGGCAACAACCAGATCTCGCTGAAGCCCGTTCAATGCAGCCCAGTGAGAAAACTGACCTGCGCCAGCGGCCGGCCTGCTCTCAAGGTGTACGACCAGGACGGCTGCTGCTTCCAGTATGAGTGCGAGTGTGTCTGTGCCAGCTGGGGTTACCAGCACCACATGACGTTCGACGGGACATACTACCCCTACAGCAGCCAGTGCAGTCACGTGCTGGTGCAACAGATCAGCCCCAAGTACGACAACTTCCACATCTACGTGGACGACAATGACTGCTACGGCCAGCAGAGCGGGCTCTGCTCCCGCACCCTGCGCATCTTCTACAGGGGCAGCGAAGTCCGGCTCACCCAGATGAACAGGAAGAATATGGTGATCTTCAACGGTAAACAAGTCTTCCCCAACCTATACAAAAACGGCTTCAAGATCTTCTCCACAGGCATCAGCATCCAAGTGCAGATCATGGATTTCAATGTGCTAGTGGTGTACGCAGGCATGGTCTCCACAGTCACTGTGTCATCCAGACTGTTCTCCCACAACACGGAGGGACTCTGTGGCACCTGCACTAACAACAGGCAGGAGGACTGCCGGCAGCCCAGTGGCGTCACGGCCGCTTCCTGCCCCGAGATGGTGAAGGAGTGGCTGGTGCCTGGACAGAACAGATCGGCCTGTGACAACACTGCTCCCACCACCAGGGCACCAACAACCACCATGCCAGCTCCCTCACCCATGACTGGCACTCCCAGCACTGCACAGTCCACAGCAACACCAACAACTCCAACGACCGCTGTGTCCAACCCCCGGCCCTCATGCGAGGCCCCCCTGTGCGAGCTCCTCAAGAGCAAACTATTCCAGGCCTGCCACTCGCTGGTCCCTCCAGAGCCCTTCTACACGTCCTGTGTGCTGGACACCTGTGAGCTGAGCGAGGTGGATGCCGTGTGCAGTGATCTGCAGAGTTACGCCGGCCTGTGTGCTGCGCAGGGAGTCTGTGTGGACTGGAGGAACAGCACACAGGGGAAATGCTCCTCTAAGGAGTACAGAGCCTGTGCGCCCGAGGTGGAGCTCACCTGCAATCACAGGCATAATGAGGAATTCAGCGCTGATGATGAGGCCGAGTCCCAGCTGACGGAGGGCTGCTTCTGTCCCAACGGGACCACGCTATTCAACCCCAATATGGACGTCTGTGTTGCCTCCTGTGCCTGCACCGGCCCAGACGGCATTCCCAAGGAGGTAAAGCAGCTCTTTTCACTAATCGTGTGTCAGGGAATGGAGGGGAATGCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25486 lncRNA downstream 49080 423334 ~ 424778 (-) True G20465
TU25456 lncRNA downstream 120387 346274 ~ 353471 (-) True G20446
TU25423 lncRNA downstream 156744 310713 ~ 317114 (-) False G20423
TU25424 lncRNA downstream 156744 310713 ~ 317114 (-) False G20423
TU25422 lncRNA downstream 162356 310713 ~ 311502 (-) False G20423
TU25527 lncRNA upstream 67784 546056 ~ 546501 (-) True G20501
TU25534 lncRNA upstream 110053 588325 ~ 588602 (-) True G20507
TU25537 lncRNA upstream 117205 595477 ~ 595770 (-) True G20510
TU25686 lncRNA upstream 340703 818975 ~ 823764 (-) True G20604
TU25689 lncRNA upstream 350825 829097 ~ 829524 (-) True G20607
AMCG00007002 mRNA downstream 1547 464569 ~ 472311 (-) True AMCG00007002
AMCG00007001 mRNA downstream 59880 408892 ~ 413978 (-) False AMCG00007001
AMCG00006996 mRNA downstream 93968 365990 ~ 379890 (-) True AMCG00006996
AMCG00006997 mRNA downstream 111564 356618 ~ 362294 (-) True AMCG00006997
AMCG00006995 mRNA downstream 145147 317616 ~ 328711 (-) True AMCG00006995
AMCG00007004 mRNA upstream 10383 488655 ~ 509749 (-) True AMCG00007004
AMCG00007009 mRNA upstream 75043 553315 ~ 554154 (-) True AMCG00007009
AMCG00007010 mRNA upstream 76802 555074 ~ 565774 (-) True AMCG00007010
AMCG00007008 mRNA upstream 88173 566445 ~ 568523 (-) True AMCG00007008
AMCG00007007 mRNA upstream 91863 570135 ~ 582565 (-) True AMCG00007007
TU25476 other downstream 59732 408839 ~ 414126 (-) True AMCG00007001
TU25464 other downstream 111784 360693 ~ 362074 (-) False AMCG00006997
TU25387 other downstream 213622 259583 ~ 260236 (-) True G20397
TU25378 other downstream 241364 230324 ~ 232494 (-) True G20388
TU25694 other upstream 367657 845929 ~ 848289 (-) True G20609
TU25695 other upstream 367657 845929 ~ 848289 (-) False G20609
TU25696 other upstream 367657 845929 ~ 848289 (-) False G20609
TU25697 other upstream 367657 845929 ~ 848289 (-) False G20609
TU25698 other upstream 367657 845929 ~ 848289 (-) False G20609

Expression Profile