RNA id: AMCG00007004


Basic Information

Item Value
RNA id AMCG00007004
length 4353
RNA type mRNA
GC content 0.60
exon number 27
gene id AMCG00007004
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 488655 ~ 509749 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCGAACCCCAGCACTGCGAGGTTCAGCATCTGTGCAGACTCTGGAGGCCCGACTCAGAGAGCTCAGAGTCCTGCCGTCCCCGAGGGAGGAGGGAGTCTCTCTGTGTGGTCTGGGGGGTcaacagtacagtgcagtgcctGTGGTTTGACATCCTGATAAATAGAGGCAACCTGGCGCTCAGGTTGGAGAACGATAGTGTCGGAGCAATGGACACCCCGAGGATGGCCGGGATGTGGTGTCTGCTATGGACGCTGTGCGCTGGACTGGCGTCTGCACAGGAAGAGCCAGTCTTGATGGGCAGGAATGTTGCCGTGATCCCCACTGTGGAGGTCCTGCCCACTGTCCTGGctcGTCCGCAGCGCATGTGCAGTACCTGGGGGGCGCAGCACTACCGCATGTTTGACGGGGAGCTGTTCCAGTTACCAGGCTCCTGTAACTACGTGCTGGCCTCCCACTGCCGCGCCGCCTATGAGGACTTCAACATCCAGCTGCGCCGCAGCGCCGCCGTCATCCACCTCGTCACCGCCAAGCTGGACGGCACCGTGCTGGAGCTGCGCCAGGACGGCGTCCTGGTCAACGGGCAGGCagatacagAGGGAGGCTCCCACATCACCTCCTATGATGGGAAACGCTTCCCCTTCCATGGAGACTGCTCCTACGTCCTCTCCAAGGACTGCCATAGCAGCCAGTTCACTGTGGCGGTGGAGATTCTGCGCTGTGGGCTGACGGAGACAGAGACCTGCCTGAAGTCGGTCACCCTGTCCATCAAGGGCAGGAGGACGGTGCTGCTGGTGAACTCCTATGGGAATGTGTTCATCAACGGgctcctctcccagctcccccTCACTACCGATAACTTCACCATCTTCAGCCCATCCTCCTTCTACACGGTGGTCCACACCTCGTTCGGGCTGCAGCTGCAGGTCCAGCTGTCTCCACTCATGCAGCTGTACGTGACGGCAGACCCAGTGTACAAGGGCCACACCTGCGGTCTCTGTGGGGATTTCAATGACATCCAGACTGACGATTTCAAGGCCCAGGGGGGGGTAGTGGAGGGAACGGCTGCAGCCTTCGCCAACACCTGGAAGAGCAGAGCCAGCTGCCCAGATGTGACAGACAGCCTGCAGAACCCCTGCAGTCTCAGTGCGGAGAATGAGCAATTTGCCAAGCACTGGTGCTCCCTGCTGTCCAGCCCCACCGGGCCCTTCGCTGGCTGCCACGCCACCATCCCGCCTCCGGCCTACGAAGCGAACTGCCTGTATGACAGCTGCAACTGTGAAAAGAGCGAGGACTGCATGTGCGCTGTCGTCTCCTCCTATGTCCACGCCTGCGCTGCGAAGGGCATCACACTGGACGGCTGGAGATCCAGTATCTGCACCAAATACTCCAGCAGTTGCCCCAAGACCCTGGTCTATGGGTACAGCATGACCACCTGCCAGCGCACCTGCCGATCCCTCAGCGAGCCGGACCACACCTGCCAGGTCCAGTTTGTGCCTGTGGATGGCTGTGGCTGTGCCAAGGGGACATACATGGACGAGGAGGCCAAGTGCGTCCCGCTCAGCCAGTGCCCgtgctacagtgagggggtggTGGTGCCAGCCGGGGAGACGATCACCAGGAACGGCACGCCCTGCATGTGCAAAAGAGGAAGTCTGCAGTGTGTTGGGAACGTACCTAGAGAACCAGTGTGTAAGAAGCCCATGTCCTTCCTGGACTGCTCCAAGGTGCAGCCAGGCTCCCCTGGGTCCGAGTGCCAGAAGAGCTGCCAGACTCTAGACACCGACTGTTTCAGCAGCCAGTGTGTCTCGGGCTGTGTGTGTCCAGAGGGCCTGGTGTCCAATGGGCGCGGACGCTGTGTCTCCGCCTCCCTGTGTCCCTGCGTCCACAACAGGATGGACTACAAGCCCGGGGACAAGATCCAGGTCGGCTGCAACACCTGCACCTGCAGTGACAGGAAGTGGCAGTGCACAGAGACGCAGTGCCAGGGCTCCTGTGCCATCTACGGAGACGGGCACTTCATCAGCTTTGATGGGAAGAGGTTCAGCTTCGATGGGGACTGTGAATACACCCTCAGTCAGGACTACTGCAGCAGCGACCCGGACAGTGGCTCCTTCAGAGTGATCACTGAGAATATCCCCTGCACCACCTGCTCCAAGGCCATCAAGCTCTTCCTGGGGCAAACTGAGCTGCGCCTGTCGGAGGGGCGCTACGAGGCGGTGCGCAGGGAGGCAGGCGTGGATGTGCCCTACAGCATCAGACACATGGGCATCTACCTGGTGGTGGAGGCCAGCAATGGCCTGATCCTCATGTGGGACAAGAAGACCAGCCTGTCCATCAAGCTCAACCCCTCCTTCAGGgGTAAGGTCTGCGGTCTGTGTGGCAACTACGATGGCAAGGGTAACAATGAGTTCAGCACGCGGAGCCAGAAGGTGGTGGTCAGCGCGCAGGAGTTCGGGAACAGCTGGAAAGTGTCCACCAGCTGCCCAGACGACACGCTGGGGAAAGACCCCTGCAGCTCCAACCCCTACAGGCAGTCTTGGGCCGAGAAGCAGTGCAGCATCATCAAGAGCCCACCCTGCGGATCTCCCTGCATGAAGACCTGCCGGAACCCCGCAGGGAAATGCTCCAATCAGATCCCAGGACTGGAAGGCTGCTACCCCAAGTGTCCTCCCAAGAAGCCCTTCTTCGACGAGGACGCCATGCGCTGTGTGGCCAGGAGGCAGTGCGGCTGCTTCGATGCCAATGGGAAACGCTATGGCAATGGAGAGAAGGTGCCGTCCACCAAGAACTGCGAGTCCTGCCTTTGCTCAATGAAGGGGATTGCCTGTGTCCATGAAGCCAATGAGTGCCAGTGTGTGTACCAGGGCCAGGAGTACCCAGTGAGTGCCGTGATCTACAGCACCACGGACGGCATCGGGGGCTGCATGTCGGCCATCTGTGGCGCCAATGGCACAATCAACAGAGAGGTGCGCCCCTGTGTCACCACCACCACCGCAGAGCCAACTACCACCTTCCAGTTCAGCACCACCCCTACCCCACCCCCAAGCACCACGGCCAGAACAGagtccaCCACCAGTGCTGCCCAGTCCACCACCCCGTGTGTCGAGGAAACCTGTGAGTGGTCGGTGTGGTATGATGTCTACCAGCCAGACATCGTGCCAGAGGATGGAGACTTTGAGACTTTTGAAGCCATCCGGGCGAAAGGCTTCTCTGTCTGCCAGGCGCCCAGCCAGATCGAATGCCGGGCCAGCCAGTATCCCGACACGCCCCTCGTTGACCTGGCCCAGGTGGTGCAGTGTGACCCCTCAGTGGGGTTGCTGTGCCACAACTCGGAGCAGTTCCCCCCCTTCTGCTATGACTACAAGGTGCGAGTCCTGTGCTGCAGCCATGAACCCTGCCGCCGCACCACCACCTCCGCCCTGGAGATGGGCACCTCCCCACCCTCCACCGTGTCATCCACCACATGGCGCACCACAAAGCCCACCAAGACAACAACAACGACTGGCATCCAGACCACTCCCGCCAGCTCTTCCAAgcacaccaccaccactactggGCATACCAGCCGCAAAACCACACCCAAACAGACCAGCACCGAGACGGCCCCCATTGAGACCACCACTCCTCATGGGACATTGCCCACCAGGACAACCAAGGTTGCCTTCACGTCCAGCAGCGTCCCCACCTCCCTGTCCACCAGCTCTCCCACTACCTGCAGGCGCCAGTGCCAGTGGTCCGAGTGGTTCAACACCCACCTGCCCACCTTCGGCTCAGAGGAGGGGGATTTTGACAGCTTCGGAGACATCAGACAGAGCGGAGGCGAGATCTGCACTGAGCCGTCCAAGGTGGAGTGCACGGCGGTCAAGTTCCCCAATAAGACGATAGAGGAGGTGGGACAGGTCGTGGAGTGCAGCGTCACCAGCGGCTTGCTCTGCAGGAACAAGGACCAAACCAGAGCTCTGCAGCTGTGCTACGACTACAAGATCCGGGGGATCCACAACATCAACTGTGACCTCCGGAATGGGAAAGACATCCAAGACAGCAACAACACATGGAACAACAACTCCAACAACAAGAAAGACATCACCCAGACAGACCACATCTCCAGGTCAAACATCTGGCCAGACCACACCTGTGCAGACCAGCACAGCAAAAACTATAACAGGAAAGACATCACTTGGAAAGACCACATCTCCAGACCAATCAACATCTTCCCGTCCTCTGAGCACAATTACAGGGGCAACAGAAGCCACGTCTGCCACAACGTCCCTGGTCCCCACCACATCCACCCCAGCTGTCAGAACAGGATCCACAACCGCCCCCTCCACCGAGAGGCTTGTGTCCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25486 lncRNA downstream 63877 423334 ~ 424778 (-) True G20465
TU25456 lncRNA downstream 135184 346274 ~ 353471 (-) True G20446
TU25423 lncRNA downstream 171541 310713 ~ 317114 (-) False G20423
TU25424 lncRNA downstream 171541 310713 ~ 317114 (-) False G20423
TU25422 lncRNA downstream 177153 310713 ~ 311502 (-) False G20423
TU25527 lncRNA upstream 36307 546056 ~ 546501 (-) True G20501
TU25534 lncRNA upstream 78576 588325 ~ 588602 (-) True G20507
TU25537 lncRNA upstream 85728 595477 ~ 595770 (-) True G20510
TU25686 lncRNA upstream 309226 818975 ~ 823764 (-) True G20604
TU25689 lncRNA upstream 319348 829097 ~ 829524 (-) True G20607
AMCG00007003 mRNA downstream 10383 473858 ~ 478272 (-) True AMCG00007003
AMCG00007002 mRNA downstream 16344 464569 ~ 472311 (-) True AMCG00007002
AMCG00007001 mRNA downstream 74677 408892 ~ 413978 (-) False AMCG00007001
AMCG00006996 mRNA downstream 108765 365990 ~ 379890 (-) True AMCG00006996
AMCG00006997 mRNA downstream 126361 356618 ~ 362294 (-) True AMCG00006997
AMCG00007009 mRNA upstream 43566 553315 ~ 554154 (-) True AMCG00007009
AMCG00007010 mRNA upstream 45325 555074 ~ 565774 (-) True AMCG00007010
AMCG00007008 mRNA upstream 56696 566445 ~ 568523 (-) True AMCG00007008
AMCG00007007 mRNA upstream 60386 570135 ~ 582565 (-) True AMCG00007007
AMCG00007005 mRNA upstream 119026 628775 ~ 639952 (-) True AMCG00007005
TU25476 other downstream 74529 408839 ~ 414126 (-) True AMCG00007001
TU25464 other downstream 126581 360693 ~ 362074 (-) False AMCG00006997
TU25387 other downstream 228419 259583 ~ 260236 (-) True G20397
TU25378 other downstream 256161 230324 ~ 232494 (-) True G20388
TU25694 other upstream 336180 845929 ~ 848289 (-) True G20609
TU25695 other upstream 336180 845929 ~ 848289 (-) False G20609
TU25696 other upstream 336180 845929 ~ 848289 (-) False G20609
TU25697 other upstream 336180 845929 ~ 848289 (-) False G20609
TU25698 other upstream 336180 845929 ~ 848289 (-) False G20609

Expression Profile