RNA id: AMCG00007008


Basic Information

Item Value
RNA id AMCG00007008
length 1653
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00007008
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 566445 ~ 568523 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGCCACCCACAGCTTTGAGTGCTGGTGTGTGTACCAGGGCCAGGAGTACCCAATGAATGCTGTGATCTACAGCACCACAGATGGCATCGGGGGCTGCATCAGTGCCATCTGTGGTGCCAATGGGACCATCCATCGTGAGATCAGCCCCTGCGCCAGCACCACTGCTgcccccaccaccaccttcaTATTCAGCACTACAGCCAAGCCCTCCTCTACAACCACCCCCCAAGCTTTTTCAACTACTTTCGGTCCACCTTCAACACACTGTGAGGTGGAGACTTGTGAGTGGTCAGTCTGGTACGACAGCCATTACCCTGACCTAGGACCTAACCACGGAGACTTTGAGACTTTTGAAGGGCTCAGGAAGGAGGGCTTCCCAGTGTGCAAGGATCCCACAGACCTACAGTGTGAGGCAGCCATGTACCCCGACACACCCCTGGCTGAGTTGGGACAGGTGGTGCAGTGCGACAAGGCCTTTGGGCTCATGTGCCAGAACGAAGATCAGAACCCACCCATCTGCTACAATTATAGAATCAGAGTGCTATGCTGCAGCTCCAAACCCTGTGCAGCAACATCCCCTGGACAAACCACACCCAGTCAGACCACATCCAAGAAGAGCACACCTGAGAATACCTCAGCTGGTAAGACCACGCCTGGACACACCACAACTGGGCAGACATCTCAGGGCCAGACCACACCTGGTAGGACCACACCTGGACAGACTACACCTGGACAAACTACACCTGGACAGACCACATCTGGGAAGACCACACCTGGACAGACCACCCCTGAGCTTACCACATCTGGACGGACATCACCTAGGCAAACCACATCTGGTCAGTCCACATCTGGACAGACCACACCTGGGAAGACCACACCTAGACAGACCACACCTGGTCAGTCCACACCTGTACAGACCACGAAGACTCTGTTCACATCCAGCAGTGTCCCCACCTCCCTGTCCACCAGCTCCCCTACTACCTGCAGGCGCCAGTGCCAGTGGTCCGAGTGGTTCAACACCCACCTGCCCACCTTTGGCTCAGAGGAGGGGGACTTTGAGAGCTTCGGAGACATCAGGCAGAACGGAAGCAAGATCTGCACTGAGCCATCCAAGGTGGAGTGCACGGCGGTCAAGTTCCCCAATAGGACAATAGAGGAGGTGGGACAGGTCGTGAAGTGCAGCGTCACCAGCGGCTTGCTCTGCAGGAACAAGGACCAAACCGGAGCTCTGCAGCTGTGCTACGACTACAAGATCCGGGTGCAGTGCTGCAGCTTTGCATACAACCTCAGCCACAGGGAAAACGACCACTGCAGGTGCAACATCTGGACAATCTACCTCTCCGGGGAAAATTGCCACAGGGAGCACAGAGCAAAGTACTCAGGAACACACCACCCCAAGGGGATCCACAGCGTTTACTGTGACCTCCAGTACAGGAAATACATCCAAGCCAGCACAGACAACATCAGCTACTCTTACGTCTGCTCATGTTTCAGCCCCAGGGACAACAACTTCCCATCCTTTGAGCACGAATGCAGGCCCAACAGAAGCCACGTCTGCCACAACATCCCTGGTCCCCATCACATCCACCCCAGCTGTCAGAACAGGATCCACGATCGCCCCCTCCACCGAGAGGCTTGTATCCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25527 lncRNA downstream 19944 546056 ~ 546501 (-) True G20501
TU25486 lncRNA downstream 141667 423334 ~ 424778 (-) True G20465
TU25456 lncRNA downstream 212974 346274 ~ 353471 (-) True G20446
TU25423 lncRNA downstream 249331 310713 ~ 317114 (-) False G20423
TU25534 lncRNA upstream 19802 588325 ~ 588602 (-) True G20507
TU25537 lncRNA upstream 26954 595477 ~ 595770 (-) True G20510
TU25686 lncRNA upstream 250452 818975 ~ 823764 (-) True G20604
TU25689 lncRNA upstream 260574 829097 ~ 829524 (-) True G20607
TU25693 lncRNA upstream 277406 845929 ~ 917829 (-) False G20609
AMCG00007010 mRNA downstream 671 555074 ~ 565774 (-) True AMCG00007010
AMCG00007009 mRNA downstream 12291 553315 ~ 554154 (-) True AMCG00007009
AMCG00007004 mRNA downstream 56696 488655 ~ 509749 (-) True AMCG00007004
AMCG00007003 mRNA downstream 88173 473858 ~ 478272 (-) True AMCG00007003
AMCG00007002 mRNA downstream 94134 464569 ~ 472311 (-) True AMCG00007002
AMCG00007007 mRNA upstream 1612 570135 ~ 582565 (-) True AMCG00007007
AMCG00007005 mRNA upstream 60252 628775 ~ 639952 (-) True AMCG00007005
AMCG00007011 mRNA upstream 86343 654866 ~ 658913 (-) True AMCG00007011
AMCG00007006 mRNA upstream 100641 669164 ~ 670865 (-) True AMCG00007006
AMCG00007015 mRNA upstream 155938 724461 ~ 724961 (-) True AMCG00007015
TU25476 other downstream 152319 408839 ~ 414126 (-) True AMCG00007001
TU25464 other downstream 204371 360693 ~ 362074 (-) False AMCG00006997
TU25387 other downstream 306209 259583 ~ 260236 (-) True G20397
TU25378 other downstream 333951 230324 ~ 232494 (-) True G20388
TU25694 other upstream 277406 845929 ~ 848289 (-) True G20609
TU25695 other upstream 277406 845929 ~ 848289 (-) False G20609
TU25696 other upstream 277406 845929 ~ 848289 (-) False G20609
TU25697 other upstream 277406 845929 ~ 848289 (-) False G20609
TU25698 other upstream 277406 845929 ~ 848289 (-) False G20609

Expression Profile