RNA id: AMCG00007009


Basic Information

Item Value
RNA id AMCG00007009
length 336
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00007009
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 553315 ~ 554154 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTACAGCTGAACCTCCTGGGTCAACAACCTCGCTGTCTGTTCCACCCACCTCCGTCAAGCCAACCGACACCCCACCCTGCAAGGCCCCTCTGTGTGATCTCATCAACAGCGAACTATTCCAGGCCTGCCACTCACTGGTCCCTCCGGAGCCCTTCTACACATCCTGTGTGCAGGACGCCTGTGAGCTGAGTGAGGTGGACGCCGAGTGCAGTGATCTGCAGAGCTACGCCGGCCTGTGCGCTGAGCAAGGAGTCTGTGTGGACTGGAGGAACCGCACACAGGGGAAATGCTGTGAGTTACATGCTAAACACGTTGGGAAGGAGCAGGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25527 lncRNA downstream 6814 546056 ~ 546501 (-) True G20501
TU25486 lncRNA downstream 128537 423334 ~ 424778 (-) True G20465
TU25456 lncRNA downstream 199844 346274 ~ 353471 (-) True G20446
TU25423 lncRNA downstream 236201 310713 ~ 317114 (-) False G20423
TU25424 lncRNA downstream 236201 310713 ~ 317114 (-) False G20423
TU25534 lncRNA upstream 34171 588325 ~ 588602 (-) True G20507
TU25537 lncRNA upstream 41323 595477 ~ 595770 (-) True G20510
TU25686 lncRNA upstream 264821 818975 ~ 823764 (-) True G20604
TU25689 lncRNA upstream 274943 829097 ~ 829524 (-) True G20607
TU25693 lncRNA upstream 291775 845929 ~ 917829 (-) False G20609
AMCG00007004 mRNA downstream 43566 488655 ~ 509749 (-) True AMCG00007004
AMCG00007003 mRNA downstream 75043 473858 ~ 478272 (-) True AMCG00007003
AMCG00007002 mRNA downstream 81004 464569 ~ 472311 (-) True AMCG00007002
AMCG00007001 mRNA downstream 139337 408892 ~ 413978 (-) False AMCG00007001
AMCG00006996 mRNA downstream 173425 365990 ~ 379890 (-) True AMCG00006996
AMCG00007010 mRNA upstream 920 555074 ~ 565774 (-) True AMCG00007010
AMCG00007008 mRNA upstream 12291 566445 ~ 568523 (-) True AMCG00007008
AMCG00007007 mRNA upstream 15981 570135 ~ 582565 (-) True AMCG00007007
AMCG00007005 mRNA upstream 74621 628775 ~ 639952 (-) True AMCG00007005
AMCG00007011 mRNA upstream 100712 654866 ~ 658913 (-) True AMCG00007011
TU25476 other downstream 139189 408839 ~ 414126 (-) True AMCG00007001
TU25464 other downstream 191241 360693 ~ 362074 (-) False AMCG00006997
TU25387 other downstream 293079 259583 ~ 260236 (-) True G20397
TU25378 other downstream 320821 230324 ~ 232494 (-) True G20388
TU25694 other upstream 291775 845929 ~ 848289 (-) True G20609
TU25695 other upstream 291775 845929 ~ 848289 (-) False G20609
TU25696 other upstream 291775 845929 ~ 848289 (-) False G20609
TU25697 other upstream 291775 845929 ~ 848289 (-) False G20609
TU25698 other upstream 291775 845929 ~ 848289 (-) False G20609

Expression Profile