RNA id: AMCG00007043


Basic Information

Item Value
RNA id AMCG00007043
length 2497
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00007043
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 1504301 ~ 1518409 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAAACAAAACTGCAGCCCGTCACCCTGATGAAGGAAGCACTGCCTATTTAGATTTGCAAACAACAaagctggaaaagaaaaaattgaCACTTTCACCTTCTGAGAAAGCAAAGTTGCTGGACTGGAACCTGTCCCTTGCAGAAGATGTGTGCAGAAATAAGATGGCAGGAGATGCTGGGGCTGCTAAGATTGACCGACAAATCGAAGATGAACATTGCTCACCAAATACTTCTAATGTGCCTTCAGTTGCTACTGGCAATCATTTGACTCAGTCTACGCAAAGCCATGCTTCAGCTCCTGAGGATAACAAAACACCTCAAACAACATTTCAGATTGTTGCAAACGTCCTGAGAAGGTCTTTCAGGGTATCTGGCAGTGGCTCTTCCTCAGATGTCACCAGAAGGCCTGAGAGGAGTGGTCCTAGGACGAGACCCCTGTCAGATGGATCTTTCTTCAACTTCACAAACCTATTTGGTACCGCATCCTCTGAAGAACAACCTGGTTTTTCCATGGCGGAGTCAGGAAAAGGGGGGACTTCGGCGGGAGGAGGCCAGGTTAGGAATCCTCCTCCGCATTCAAGCTCAGCTACCTCAGCACCTGGAAGGCCTGTGTTGGAAGCAGTGAGATTTCACCAAGTTCCAGGGGACATCAGGAGTGAAGGATCCCTCAGAACGGAGGAGGATATACCAGTGCTCTTCGAAAAATTTTCCTTGAATGAAAAGCCCTCCGGGACCTCAAAGGATGATTTGACATTTCTGCAGCCAAAGAAGCTTAATTTCTTTTCTTCCTTGAGAGTGAAAAGGAGAGATGGCCCGGAGAGGAGGGGTGCAGAAACAGAGGATGTTGGAGGGAAAAGTGACATCTGGGCACTTCTTACCAACCTTAGGAAGAAAGGCTCAAGTCAGCAGTCTGAAGGAACCCAACTTGAAGCCAGTTCTTCAAGTGAGGAGGAGAAACCTCCCTCAAAACAGAAGGTTTCTGCACATAAGCAAGGAAACTCCAGCTTCAGACAAAGGAGGAAGCAGGAGAAGATTGAGCAGCAACAGGCCCGGCGAGAGCAGCTGAAGAGACTGCACAGAGCTCAGGTGATACAGCGGCAGCttgaggaggtggaggagaggcagagagccCTGGAGGAGCGAGGGGTGAAACTGGAGAAAGTGCTGCGGGGGGAGTCAGACTCCGGCCCAGCGGATGAAGCTCAGCTCCTACAAACCTGGTTCAagctggtcctggagaagaaCAAACTTGTCCGTTATGAATCCGAGCTCATGATTTTTGCCCGAGAGCTGGAACTGGAAGACTGTCAAAGCAGGTTACAGCAAAAACTGCGCCGGAGAATGGCCACAGATGACTCCCATAAGAGTCAGCAGGAGCTGGCTGATGAACAGAAGATCCTCAGTGAGATGATGAGGGTGGTGGAGAAAAGGGACAGACTGGTGGCACTGCTGGAGGAGCAGAGAGTTCGAGAGAAGGCTGAAGACAATGACATGGAGAGCTTAGTCCTATCTAAGGGATATCAGATTAACTGGACTTGAACTTCCACTCTACCAGGAGACAATGTTACATTTCGGGAACCTAAACCCTGAATTCTGCTAAATTCTGCTCTAAAACTGAAAAGGGAAATGGTAGCATCTGAACTGCATTTTTAGAGTGATGAAACACATCATTTACATTATGCTGGAAGGCTGCTAATAGAACGAAAATCaagttaaattatattgtagCTATATTGTAGTGGAAAAACACCCAAGAAAGCGAAATGGGTTTACATTGATAGGTCAAAGGGATTTAACTATATGTGTTACTAAGTTGaatttcaatatgaaaaaagTCTGTTGCTTTTTATTGAATGTCTTGGTTTCCCAAGATAGTTCTTTAGTGCAATGTAGAATCACATCTCTGTATAAGGCATTCAAGACTATGTAATAATTTGTAAGCATTTTAACATTCTAGAgatcaaatacaaatcaataatttgCAGATGAGTCcgtttgaaaatgcatttttcagctAAAGTAGCTACAGAAAGTTTAAGACGACTGGGAATGTTCTATTCTGGGAATAACAGCTGAGGATGCTGGCCACTGGgaatatttaagaaataaaaaactgaacttCCTACCAAAATCATTGACATTGTACACATTATTCTAACTTGATCAGTCTTTTTTCAGGTGCCACATTTCATTgtcttttattaaaattaaaaataattaaaaaaaggtaataattaatttgtatttttgtattctttactCACAGCTGCACTTACCTtgaaaaaagcaaaccaaaaacaaaatactcatCTTGCAATTTAAGCTTTAAATGTGAGTGATTCAAAGCTCCAActttaatcacacacacacatatatatttgtggcacatacatttaaataactaagagcgaaattgtgaatttgtttttctggtgttgcattaatatattaaaaaaatgtatatacacttaTTTACCATACATAATAAAGAACAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25839 lncRNA downstream 123191 1378456 ~ 1381110 (-) True G20726
TU25840 lncRNA downstream 123191 1380510 ~ 1381110 (-) False G20726
TU25778 lncRNA downstream 512302 990555 ~ 991999 (-) True G20676
TU25707 lncRNA downstream 567799 906596 ~ 936502 (-) True G20614
TU25945 lncRNA upstream 157895 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA upstream 204147 1722556 ~ 1727167 (-) True G20802
TU26063 lncRNA upstream 653495 2171904 ~ 2172483 (-) True G20870
TU26116 lncRNA upstream 681644 2200053 ~ 2254560 (-) True G20908
TU26117 lncRNA upstream 681791 2200200 ~ 2308118 (-) False G20908
AMCG00007040 mRNA downstream 4287 1477252 ~ 1500014 (-) True AMCG00007040
AMCG00007039 mRNA downstream 68994 1432423 ~ 1435307 (-) True AMCG00007039
AMCG00007041 mRNA downstream 93059 1394356 ~ 1411242 (-) True AMCG00007041
AMCG00007037 mRNA downstream 120722 1377964 ~ 1383579 (-) True AMCG00007037
AMCG00007035 mRNA downstream 219274 1265591 ~ 1285027 (-) True AMCG00007035
AMCG00007045 mRNA upstream 14050 1532459 ~ 1570344 (-) True AMCG00007045
AMCG00007044 mRNA upstream 81526 1599935 ~ 1626659 (-) True AMCG00007044
AMCG00007046 mRNA upstream 118706 1637115 ~ 1653312 (-) True AMCG00007046
AMCG00007047 mRNA upstream 141095 1659504 ~ 1697833 (-) True AMCG00007047
AMCG00007051 mRNA upstream 237181 1755590 ~ 1756342 (-) True AMCG00007051
TU25725 other downstream 551239 952236 ~ 953062 (-) True G20630
TU25697 other downstream 656012 845929 ~ 848289 (-) False G20609
TU26054 other upstream 626307 2144716 ~ 2145815 (-) False AMCG00007059
TU26061 other upstream 648901 2167310 ~ 2170570 (-) False AMCG00007059
TU26783 other upstream 3523250 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 3524111 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 3538378 5056787 ~ 5057406 (-) True G21429

Expression Profile