RNA id: AMCG00007054


Basic Information

Item Value
RNA id AMCG00007054
length 3823
RNA type mRNA
GC content 0.44
exon number 22
gene id AMCG00007054
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 1759494 ~ 1794639 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCCAGGATATTTTGTGACAGATGTGTCTACGgtgctgaaaaaaaatattctaacaGAAATCCTGTCTTCTGGTTCAGGCTCCAAAGCTGCTGCCGAGTACAGCAATGGCATCTTTGACATGGGGTCTCCAGGCTACTTGGGAACCCTACAGGTTTTACAGCTTGCTGAAGACCTGAAAATGGCTCTGGAACTGCAGGGGAGTGAAGAGGAGAAAGAGTCTTTAAGAACCCAGATGCCAGCGCCAACAGCCCAATATCTGTTGCAATGGCTGGGGAAAGGCACAGTAAATCTCCGGTCTCCAGTGAACAATGAAAGCTATCAGGATCGTCTGACGCGATTAGAAGGCGATAAGGAGTCATTGGTTCTCCAGGTGAGCGTGCTCACAGACCAGGTGGAGGCTCAAGGAGAGAAGATACGAGACCTGGAGACTTCCTTAGATGACCACCATCAGAAACTGAACTCCACAGAGGAAATGCTGCAACAGGAGCTGCTGAGCAGAACGTCCCTAGAAACACAGAAACTGGATCTTATGGATGAAGTTTCatatctgaaactgaaactggtCGGAATGGAGAAGGGACAGATCGACTGTGAGGACAAGCAGCACAAAGCCGAGTATGTAGTAAATCTGATTAGTGAGCTACAGGAGCAGATGTGTAAATTTCAGCAGGAGATCAATACAAGAATCCAGGAGAAAAAGGCACTGGAAAGTAATGCTGACACTAAAGCTAAGGAGCCACACCAGAGCACAGACACAAGCTTAGGCAGCTCAAACACTGAGGACTGCTGTTGCTGTAGAGGAGAGAATGGCCTGCTGCAGGAACTCAGACTCCTGAAGAACAAAGTGGATGAATTGGAGGGGGAAAAATCACAGTACGAGAGAAAACTGAAGGCGACCAAGGCAGAAATATCCGATCTTCAGCACCTACTGGCAACAAAAGATGCAGAAATTGAATGTCTGCAAAGTCAGCTGTTGTCCAGAGCTCCGTTATCCAATGATATCACAGAAAGAGATCAGGAACTACAAAGGCTGAAAATAGGAATGGAGTCTTTGTTGACAGCCAATGAAGAAAAGGACCGTCGCATAGAGGAGCTGACGATTCTCTTAAATCAGTATAGAAAGATTAAGGATGTCATGGCAGTAGCACAAGGCGGTAGTGAGAGAAATCTGTCTGGCAGTAGTGAGGAGGAACTCAATGGAAACACCAAGATGAGGAACACAGTCCACAAAAGCAACTCGGAGAAGATTCAATCAGAGATGTCTTCCAGAGGTTCTTCACCACTTTTAGTTTCCCCTTCATCAATACAAAGGGAGACAGACACCAGGGCACAACAAAGGATGTTATCCAGTAGTTTGGAAGAATTACAGAGTGGGTCTTTACAAAAGAGTCCACAACTTATAGAAAGTTACAAATACCAGACTTTGCCAGGGAAACTATCAAGATCCCACCAAAATGGAGATAAAGAGAAATACAAGTCGCCTGATGTACAAACATCGATGGAGGAGGCTGAAGAAAGTGAATTCAACTTAAgaaagacagagaaaatggATGATACAACATCATCTGACCTTTCACCTCTGTCATCGGGCGTTGACTCGGGACAACAGTCTCCCGTCTCGCCGGAGAACAAAAAGAATTCCAAAGGCATCAAGAAATTCTGGGGAAAGATcagaagaacccagtctggtaCTCTGCAGGGAGATGACCTGGAGCCGTCTGAGTTCAGGAGAGGAGGCCTGCGGGCCACAGCAGGGCCCCGACTGGCTCGGACTAAAGAAACAGGAAGCACAATCTGTGACCTGAACACTCCCTTCTCTAAGTGGACAACAGAGCAGGTGTGTGGCTGGCTGGAGGACTTTGGTCTGGCTCAATACGTGAATCTCGCCAGGCACTGGGTCAGCTCTGGACAGACACTCCTAACTGCGTCTCCTCAGGAGCTTGAAAAGGAGATGGGAATAAAACATGCCCTGCATAGAAAGAAGTTACAGCTGGCTGTCAGATCTTTCAATACTAAACTGTCCGAGAAATCAGCCGACCTGGACCACATCTGGGTGACACGTTGGCTTGATGACATAGGGTTACCTCAGTACAAAGATCAGTTCAATGAAGCCAGAGTGGATGGCAGGATGCTTCAGTACTTAACAGTGAATGACCTGCTGTTTCTCAAAGTCACAAGTCAGCTCCATCACCTCAGCATTAAATGTGCCATCCATGTCCTGCATGTCAACAAGTTCAACCCCAACTGCCTGAGGCGGAGGCCTGGAGATGAGAATAAGACCTCCCCCTCTGAGGTGGTGCAGTGGTCAAACCATAGGGTGATGGAGTGGCTGCGCTCGGTGGATCTGGCCGAATACGCGCCGAACCTGCGTGGCAGCGGGGTGCACGGGGGCCTTATCATTCTGGAGCCGCGCTTTAATTCGGACAGCTTAGCGATGCTGCTCAACATTCCCCCCCAAAAGACGCTTCTGAGGAGGCACCTGACGACCAACTTCAACATGCTGATCGGCTCAGAGGCACAGCAAGAAAAACGGGACTTCATGGAGTCATCCAGTTACACACCTCTGACAACCACGGCAAAAGTCAGGCCAAAGAAACTGGGATTTTCACATTTTGGGCAGCTGAGGAAAAAGAAGCTAGATGATTCCACGGATTATATTTGCCCGATGGACACTGCCCCGCCTGTCACCAATGGAGCCCACAGGAGCTTTGGGGGATTCAGGGGACTGAGTCCAATCTTTGACAGGGATGTGGAGAGACTGGAGCAGGTGGGACAAAACAGCTGATGCAGCACGAATGGGATCCATCACAGCTTGCAAACAATAACCCTGTGCCATCATCTAACACTGAAACCTCTCGACCCATGGGCATGAATACTGTTCAGGACATACTAAAATGGAAATTCGCTGGAAGCAGTCTTGTCACTTTCTAATCATCCTGACAATTGTGGATGCAGTATTTTAGTACTGATGTTTAATACCATTTGTCTCATTAGTTTAATACAccattttcatgcattttttttattaatatgatataattatttgttgtgcattttaagactttataaatatttcttacagattacagtgttttgtaatacattttgcaaaggaCAAATTCCAGACTGGTCATTTTACTGTTTGCCAGacagttattttgaaatgcaaactgTGCAATATTTGCACATTGAGGggatatatttattgtaatggaattgtattatattacaaCATAACCACAAGACATCCTGCAACTTTGTCCAcgtttttagaaaaaatattttgttaattctcACAcgcttttattttgctataaatATAACCTATACATAATACCTGAACTATTTTTTTATAGCAAACTAAGGTATGCTGTTGTTATTCAGTAGGTATTTGGTTCCTATGTCATTGtaaatagcattttaaaaaataaattggattacaataataaatgaatcTCAACAGAGGTGAGtgcatattgttttttcctCAGTATTATGaaacaatatactgtatttttgtacactGCATGTTAAGCAGTTCTTTAAGAAATAAACCCCGTTCCAACTTGAAAATCTcttgaaaatctttttttaagcaTGCCTGAagttgaaatatttgttttttctaaaatgCAATCAGACATCATAACTGCAACAGATTCTGCAAGCCTGTCAATCAAAGTGTGTGGGGTTGTGAAAGTAACCCAGGACACAGCCTTGTTTTACAGCGCATGATTAACAAAGAATAATCATTCTCTAACCGGCTGTCAGTTAGTGCTTTTGTTGACCCTGAAATGTCAGTTTTGTGCAAGAAGAATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25945 lncRNA downstream 29015 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA downstream 32327 1722556 ~ 1727167 (-) True G20802
TU25839 lncRNA downstream 378384 1378456 ~ 1381110 (-) True G20726
TU25840 lncRNA downstream 378384 1380510 ~ 1381110 (-) False G20726
TU25778 lncRNA downstream 767495 990555 ~ 991999 (-) True G20676
TU26063 lncRNA upstream 377265 2171904 ~ 2172483 (-) True G20870
TU26116 lncRNA upstream 405414 2200053 ~ 2254560 (-) True G20908
TU26117 lncRNA upstream 405561 2200200 ~ 2308118 (-) False G20908
TU26123 lncRNA upstream 492185 2286824 ~ 2288618 (-) True G20914
TU26162 lncRNA upstream 632520 2427159 ~ 2427421 (-) True G20947
AMCG00007051 mRNA downstream 3152 1755590 ~ 1756342 (-) True AMCG00007051
AMCG00007047 mRNA downstream 61661 1659504 ~ 1697833 (-) True AMCG00007047
AMCG00007046 mRNA downstream 106182 1637115 ~ 1653312 (-) True AMCG00007046
AMCG00007044 mRNA downstream 132835 1599935 ~ 1626659 (-) True AMCG00007044
AMCG00007045 mRNA downstream 189150 1532459 ~ 1570344 (-) True AMCG00007045
AMCG00007053 mRNA upstream 27312 1821951 ~ 1824537 (-) True AMCG00007053
AMCG00007052 mRNA upstream 50016 1844655 ~ 1862173 (-) True AMCG00007052
AMCG00007060 mRNA upstream 120663 1915302 ~ 1924883 (-) True AMCG00007060
AMCG00007059 mRNA upstream 348036 2142675 ~ 2196855 (-) True AMCG00007059
AMCG00007058 mRNA upstream 410489 2205128 ~ 2218145 (-) True AMCG00007058
TU25725 other downstream 806432 952236 ~ 953062 (-) True G20630
TU25697 other downstream 911205 845929 ~ 848289 (-) False G20609
TU26054 other upstream 350077 2144716 ~ 2145815 (-) False AMCG00007059
TU26061 other upstream 372671 2167310 ~ 2170570 (-) False AMCG00007059
TU26783 other upstream 3247020 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 3247881 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 3262148 5056787 ~ 5057406 (-) True G21429

Expression Profile