RNA id: AMCG00007057


Basic Information

Item Value
RNA id AMCG00007057
length 1224
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00007057
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2238167 ~ 2244432 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTCACAAGTCTTGGTCTACCCACCACATGTTTATCAAACCCAGACAAGTGCCTTTTGTAGTGTGAAGAAACTCAAAGTAGAGCCAAGCAGTTGTGTTTACCATGCGAGAGCCTACCCACGGACGTATTTGAATGGTCGAAACCTCGGCATCGCTAAACCGACAAACATTGTTAATTCATTTCAGACGCAAGATTTGGTGCGTGGCAAACACCACGGGCAGAACTTTTTGTTGCAAGCTGTTACCTTAAAAGCTGCACGGGAGGAGCCCAGGCCACCAGCGGCGCAGGCGCAGCAGCGGCAGCCTCTGCAGCGTGGGGGGGCACCCTTGCAGGGCACAGGCAAAGGGGGCAACAGTGGAGGAGGTGGAGCAGGAGGAGACGACGACGACGGGGGAGGTTTAAACTTGGCGGATAGCTCCCAGAGATGTGGGCTGAAACGTAAGAGCGAGGAGCTAGAGAACAGAGGTAGCACCATGCAGATTGTGGAGGAACTGTCCATGTTGCCTGCGATGTTGCAAACGAATGTGGGAAACCCGGTGGCCGTGGTGGGCGCCTCGAAGCAGAATGGCGTCGGCGGGGATGGGGACTACCAGCTGGTGCAGCACGAGGTGTTGTGCTCTATGAAGAATACGTATGAGGTCCTGGACTTTCTGGGGAGGGGGACCTTCGGTCAGGTAGTCAAGTGCTGGAAAAGGGGGACGAATGAAATAGTGGCCATTAAAATACTCAAAAACCACCCCTCGTATGCACGGCAAGGGCAGATTGAGGTGAGTATTCTCGCCCGGCTGAGCAGCGAGAACGCGGAGGAGAATAACTTGGTACGGGCTTtcgaatgctttcagcaccgcAATCACACCTGCCTGGTGTTTGAGATGCTGGAGCAGAACCTGTATGACTTCTTGAAGCAGAACAAGTTCAGCCCCCTGCCCCTGAAGGTAATCCGGCCCATCCTGCAACAGGTGGCCACTGCACTGAAAAAACTGAAGAGCCTTGGCCTCATTCACGCGGACCTCAAACCGGAGAATATCATGCTGGTGGACCCTGTGCGGCAGCCGTACCGGGTGAAAGTAATAGACTTTGGATCTGCCAGCCATGTTTCGAAAGCAGTGTGTTCTACGTATTTACAGTCGCGGTACTACAGAGGGGAATATGTGCAGTATGATGTAGTGGAAAGCTCTTATCAGTTCCAGTCTTTTGAGATCTCCCTCATTGGGAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26063 lncRNA downstream 65684 2171904 ~ 2172483 (-) True G20870
TU25945 lncRNA downstream 507688 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA downstream 511000 1722556 ~ 1727167 (-) True G20802
TU25839 lncRNA downstream 857057 1378456 ~ 1381110 (-) True G20726
TU26123 lncRNA upstream 42392 2286824 ~ 2288618 (-) True G20914
TU26162 lncRNA upstream 182727 2427159 ~ 2427421 (-) True G20947
TU26186 lncRNA upstream 303572 2548004 ~ 2548289 (-) True G20965
TU26198 lncRNA upstream 384665 2629097 ~ 2637796 (-) True G20976
TU26204 lncRNA upstream 400473 2644905 ~ 2663649 (-) True AMCG00007072
AMCG00007058 mRNA downstream 20022 2205128 ~ 2218145 (-) True AMCG00007058
AMCG00007059 mRNA downstream 41312 2142675 ~ 2196855 (-) True AMCG00007059
AMCG00007060 mRNA downstream 313284 1915302 ~ 1924883 (-) True AMCG00007060
AMCG00007052 mRNA downstream 375994 1844655 ~ 1862173 (-) True AMCG00007052
AMCG00007053 mRNA downstream 413630 1821951 ~ 1824537 (-) True AMCG00007053
AMCG00007062 mRNA upstream 45971 2290403 ~ 2297881 (-) True AMCG00007062
AMCG00007063 mRNA upstream 57951 2302383 ~ 2310199 (-) True AMCG00007063
AMCG00007065 mRNA upstream 82180 2326612 ~ 2346701 (-) True AMCG00007065
AMCG00007066 mRNA upstream 105606 2350038 ~ 2363800 (-) True AMCG00007066
AMCG00007067 mRNA upstream 131704 2376136 ~ 2382023 (-) True AMCG00007067
TU26061 other downstream 67597 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 92352 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 1285105 952236 ~ 953062 (-) True G20630
TU25699 other downstream 1389878 845929 ~ 848289 (-) False G20609
TU26783 other upstream 2797227 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 2798088 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 2812355 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 3572377 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 3763208 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006218 True 7152 mRNA 0.45 16 NC_007122.7 2649891 ~ 2683979 (+)
tiger barb (Puntius tetrazona) TU184928 False 698 TUCP 0.50 2 NC_056716.1 9544977 ~ 9552382 (-)