RNA id: AMCG00007058


Basic Information

Item Value
RNA id AMCG00007058
length 2503
RNA type mRNA
GC content 0.56
exon number 14
gene id AMCG00007058
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2205128 ~ 2218145 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGCCGGAGATTATTTTGGGGTTGCCGTTTTGCGAAGCCATAGACATGTGGTCACTGGGCTGTGTGATTGCAGAGCTGTTCCTCGGATGGCCGCTGTACCCTGGGGCTCTGGAGTATGATCAGATTAGATACATATCTCAAACACAAGGGTCACCTGGGGAGCATTTGCTGAATGTGGGGACAAAAACTGCAAGGTTTTTTTGCAAGGATTCTGATTCCCCCTATGCAGGGTGGAGACTGAAGACAACAGAGGAACATGAAACGGAGACAGGGATGAAGTCAAAGGAAGCCAGGAAGTACATCTTCGGCTGTTTGGATGATATAGCGCACgtGAACATGGTAATGGATTTGGAAGGAAGTGACTTGTTAGCAGAGAAGGCAGATCGCAGAGAGTTTGTCAGTTtgttgaagaaaatgttattgatCGATGCTGATAAAAGAATCACCCCAGCAGAGACCATGAGCCATCCCTTTGTCACCATGCAGCACCTCCTCGACTTTCCTCACAGCAACCAtgtgAAATCCTGTTTCCACATAATGGATGTTTGCAGATCACGGTCAAACACCTACGATGTAAGCAATCGCAATAAGACTCCATTCATGAGACCCGTCACCTCAAGCAATGCAGCGAATCTGACGGTGGCTTTTAATAAGATGGGCACCGTTCACACTCAAgCTTTAGCACCATCTGGTCCATCTGTGATGCACCATGGGATACCACTGCAGACAGGAAGTGCTCAGTTTGGTTGTAATGATTCTTTTCAGCAAGCATTGATCCTCTGCCCCCCAGCTATTCAAGGAATTCCCACTAATCCCAGCAAGCCTGCTGGTTACTCCGTAAGAATGGACAATACCATGCCTTTAGTAACCCAAGCGCCCCCCATGCAGCCATTGCAGATTCGACCAGGTGTTATAACCCAGACCTGGTCAAACAGGACCCAGCAGATCCTGGTCCCGGCCTGGCAGCAGGTAACTCCCATGGCCCCGTCTACCACAGCGCTGGCCGCCGACACCGTGGCCGTCCCACAGAGACTGGGAGATTGGGGGAAAGTGCAGCCACATGGCAACCATTACGGCTCCATGATGCCACAGCCTCTTCTAACCAACCAAATGACCATGTCAGCACACCAGCCCATAAGCATAGGTATCGCCCATGTAGTGTGGCCCCAGCCAGCTGCTAACAAGAGAAACAAGCCCTGCCAGAACAGGAGTAACAACATCCTACACAACACCAACACGCAGAACCAGATACGCATGTCCCCAAAGATAGCCGATAATGCTAAAAACGCGCAGGAGCAGAGCTGCGTCGCGAGGACGCAGGACAATCGcaaccctgagagagagacacggagCTGCTGCAAGGCAGGGCAGGACCCTGGCGACCTGGCCATTTCCAACAAGCAGCGCCACACCATCATCATCGCAGACTCCCCCAGTCCCGCGGTCAGCGTCATCACCATCAGCAGCGACACGGACGACGAGGAGACGACCCAGAGACACTCGCTGGGAGAATGTGAGGGCAGTCCAGATTGCGAAGCCTGTCAGAGCACGCTGAACATTGACCGCGTGTGTTCGTTGAGCAGTCCTGACAGCACTCTCAGCACCAGCTCCTCCAACTCTGTGCAGTCCAGCCCATCCCCCTGTAAAAGACCCAACAGCATGTCGGACGACGAGCAAGAGAGCGGCTGTGACACAGTGGATGGCTCGCCGGCGTCCGACTCCTCCGGACAGAACGATAGTCCTTTCATGGAGAGCAGGTTTCTCCCAGACACCAACCAGAACCGAGAGACCCGAGTGCCGCCAGTGACGGAGCCCAGCAAGCCCGTGGTGCGCACCATGGTGGTGCCACCGATGAGAGTGCGAAACAACAACTCCGTGGCTGAGGACCAGATGGCCAACACAGATGCCTCATGTCAGTCGCTGTTCAAGGGCCGCTCTGGACACGGCAGGCCAAACCACCACTCGGGCCCGATCGCTCGCCAGCAGAAGATGGCCGCCGCATTCCAGCCCCAGCACCTCGGCTTCGGACAGGTCCAGCACTACGGATCCTGCCATCAGGAGTGGAACGGGAACTACGGTCACCGGCGGCAGCAGGCCTACATCCCCCCCACGGTCCACGGGCACACCTTCACCCTGCCCCACGGGAGCCCCAATCACACTACAGCGCACCCCCACCTGCCCGGCAACACTCACCTCGGGGGGCAGCCGGCTCTCTTGTCCTACCCCCCGTCTGCCACGCTGGGCACCGCCGCGCCCGTTGCGCACATTCTGGCGTCCCCATGTACTACCAGGCCCGTCATGCAGTCTGCCTACAGCATCTCTCACCCCGGCGGCATCGTGCATCAAGTAACCGTGGGCATCAACCACCGCCTGCTGCCTTCCCCCACCATCCACCAGAACCAGTTCAAACCAGTATTCCCCACCCATTCGTACATCGCCGCATCACCTGCTTATGCCGGATTCCCGCTCAGTCCCACCAAACTCAGCCAGTACCCTTACATC

Function

GO: NA

KEGG:

id description
K08826 HIPK; homeodomain interacting protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26063 lncRNA downstream 32645 2171904 ~ 2172483 (-) True G20870
TU25945 lncRNA downstream 474649 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA downstream 477961 1722556 ~ 1727167 (-) True G20802
TU25839 lncRNA downstream 824018 1378456 ~ 1381110 (-) True G20726
TU25840 lncRNA downstream 824018 1380510 ~ 1381110 (-) False G20726
TU26123 lncRNA upstream 68679 2286824 ~ 2288618 (-) True G20914
TU26162 lncRNA upstream 209014 2427159 ~ 2427421 (-) True G20947
TU26186 lncRNA upstream 329859 2548004 ~ 2548289 (-) True G20965
TU26198 lncRNA upstream 410952 2629097 ~ 2637796 (-) True G20976
TU26204 lncRNA upstream 426760 2644905 ~ 2663649 (-) True AMCG00007072
AMCG00007059 mRNA downstream 8273 2142675 ~ 2196855 (-) True AMCG00007059
AMCG00007060 mRNA downstream 280245 1915302 ~ 1924883 (-) True AMCG00007060
AMCG00007052 mRNA downstream 342955 1844655 ~ 1862173 (-) True AMCG00007052
AMCG00007053 mRNA downstream 380591 1821951 ~ 1824537 (-) True AMCG00007053
AMCG00007054 mRNA downstream 410489 1759494 ~ 1794639 (-) True AMCG00007054
AMCG00007057 mRNA upstream 20022 2238167 ~ 2244432 (-) True AMCG00007057
AMCG00007062 mRNA upstream 72258 2290403 ~ 2297881 (-) True AMCG00007062
AMCG00007063 mRNA upstream 84238 2302383 ~ 2310199 (-) True AMCG00007063
AMCG00007065 mRNA upstream 108467 2326612 ~ 2346701 (-) True AMCG00007065
AMCG00007066 mRNA upstream 131893 2350038 ~ 2363800 (-) True AMCG00007066
TU26061 other downstream 34558 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 59313 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 1252066 952236 ~ 953062 (-) True G20630
TU25697 other downstream 1356839 845929 ~ 848289 (-) False G20609
TU26783 other upstream 2823514 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 2824375 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 2838642 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 3598664 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 3789495 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile