RNA id: TU26054


Basic Information

Item Value
RNA id TU26054
length 501
RNA type TUCP
GC content 0.61
exon number 3
gene id AMCG00007059
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2142675 ~ 2196855 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGACGTCCACCCTGAGCTCCCAGCCGTCCATTGACGAGGTGCGGCAGCAAATGCACCTGCTCCTGGAGGAGGCGTTCAGCCTCGCCTCGGCCGGCCACACCACCAACAATCGGCTCCAAGGGACGTACAGTCCCGGACAGCAGATACCGTACTCTGAAGTGGTGACGAGTGCCCCTGGCACCATGAACAGGCCCAGAGCAGGAGTTCAGTGGATGCCAGCCTACGGACCAGATGTGTACCAGTACAGTCTGCCAAGGCCTGCCTTCAGGTTCACTCAGCTTCCTGACATGGCGATGGGCTCCCCACCTCCCCCCATACCCCCTAGGACTGGGCCGGCAGTAGTGACATCACTGCGACGATCCTCCTCAGATATTGGGGCGAAAAACAGGACATCAGAATCCGCCGTCCCTGAGCAGCAGAGTCAGCACGACAGCGCCTCCTACGTGCCGATCACCAGAGCCCCGGTTCCCTCTGCCACTGTGGAGCAGCCCATTTCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25945 lncRNA downstream 414237 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA downstream 417549 1722556 ~ 1727167 (-) True G20802
TU25839 lncRNA downstream 763606 1378456 ~ 1381110 (-) True G20726
TU25840 lncRNA downstream 763606 1380510 ~ 1381110 (-) False G20726
TU25778 lncRNA downstream 1152717 990555 ~ 991999 (-) True G20676
TU26063 lncRNA upstream 26089 2171904 ~ 2172483 (-) True G20870
TU26116 lncRNA upstream 54238 2200053 ~ 2254560 (-) True G20908
TU26117 lncRNA upstream 54385 2200200 ~ 2308118 (-) False G20908
TU26123 lncRNA upstream 141009 2286824 ~ 2288618 (-) True G20914
TU26162 lncRNA upstream 281344 2427159 ~ 2427421 (-) True G20947
AMCG00007060 mRNA downstream 219833 1915302 ~ 1924883 (-) True AMCG00007060
AMCG00007052 mRNA downstream 282543 1844655 ~ 1862173 (-) True AMCG00007052
AMCG00007053 mRNA downstream 320179 1821951 ~ 1824537 (-) True AMCG00007053
AMCG00007054 mRNA downstream 350077 1759494 ~ 1794639 (-) True AMCG00007054
AMCG00007051 mRNA downstream 388374 1755590 ~ 1756342 (-) True AMCG00007051
AMCG00007058 mRNA upstream 59313 2205128 ~ 2218145 (-) True AMCG00007058
AMCG00007057 mRNA upstream 92352 2238167 ~ 2244432 (-) True AMCG00007057
AMCG00007062 mRNA upstream 144588 2290403 ~ 2297881 (-) True AMCG00007062
AMCG00007063 mRNA upstream 156568 2302383 ~ 2310199 (-) True AMCG00007063
AMCG00007065 mRNA upstream 180797 2326612 ~ 2346701 (-) True AMCG00007065
TU25725 other downstream 1191654 952236 ~ 953062 (-) True G20630
TU25696 other downstream 1296427 845929 ~ 848289 (-) False G20609
TU26061 other upstream 21495 2167310 ~ 2170570 (-) False AMCG00007059
TU26783 other upstream 2895844 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 2896705 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 2910972 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 3670994 5816809 ~ 5820284 (-) True G21632

Expression Profile