RNA id: AMCG00007060



Basic Information


Item Value
RNA id AMCG00007060
length 1362
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00007060
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 1915302 ~ 1924883 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTTTGCAGGAGAGCAGCGCCCTCTGCTGAATTCTCCGTGGACCGGACCCGACACCTGATGTCCTTCCTCACCATGCTAGGGCCGAGCCCGGACTGGAACGTAGGCCTCTCAGCCGAGGATCTCTGCACAAAGGAGTGTGGCTGGGCTCAGAAAGTGGTGCAGGACATGATACCATGGGATGCCGGCACAGACAACGGGGTAACTTATGAGTCACCCAACAAACCAACAGTTCCTCAAGAGAAAATTAGACCACTGACCAGCCTGGACCATCCACAGAGCCCGTTCTATGACCCGGAGGGAGGCCCAATTACTCCTGTTGCCAGAGTAGTTATTGAAAGAATTGCAAGAAAGGGAGAACAGTGTAATATCGTCCCTGATAACGTGGATGATATTGTGGCAGATCTCGCGcaagaagaaaaagatgaagATGCGTCCACCTGTATGATGTCAGAGTGGATCACCTGGTCTCCCTGCAGTGTCTCGTGTGGCATGGGCATGAGGTCCAGGGAGCGATATGTCAAACAGTTCCCAGAGGATGGCTCCATTTGCACTTTACCGACAGAGGAGACTGAGAAATGCATCGTCAATGAGGACTGCTTGCCTAGCAGCTGCCTCACGTCAGAGTGGGGGGAGTGGGATGAGTGCAGCGCCACCTGTGGGATGGGTATGAAAAAGCGAGAGCGGATGGTCAAGATGCCTCCATCTGACGGGTCAATGTGCAGCACAGAACTGACTGAGGTGGAGAAATGCATGATGCCTGAATGCCATACCATCCCCTGCATGCTGTCTCCGTGGTCAGACTGGAGCGACTGCAGTGTGACCTGTGGGAAAGGGATGAGGACCCGGCAGCGGATGCTCAAGTCTCCCGTGGAGCTGGGCGAGTGCAACGAGGAGCTGGAGCAAGTGGAGAAGTGCATGTTGCCAGAGTGCCCCACCGACTGCATGGTGTCAGACTGGTCGGAGTGGTCAGAATGCAACAAGTCGTGTGGTAAGGGTCACATGATCAGGACCAGAATGATCAAGCTGGAGCCTCAGTTTGGGGGAGACCCCTGCCCAGAGACGGTACAGCGGAAGAAATGTAAAATCCGAAAGTGTAACCGGGGCTCCAGCGATGAGAAACGACGCCGCAAAGAAgccagagagaaaaggaggagTAAACAAAGCAGAGATGATATTACTGATGAGCAGCACCCGGGATGTAAAATGAGACCTTGGTCAGCATGGACCGACTGCACCAAGCTGTGTGGGGGAGGCATTCAGGAGAGATTCATGACCGTGAAAAAGAGATTCAAGAACGCTCAGTTTACAAGCTGCAAAGACAAGAAGGAAATCCGAGCATGTAACGTGCATCCTTGTTAA

Function


GO: NA

KEGG:

id description
K24427 SPON1; spondin-1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU25945 lncRNA downstream 184823 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA downstream 188135 1722556 ~ 1727167 (-) True G20802
TU25839 lncRNA downstream 534192 1378456 ~ 1381110 (-) True G20726
TU25840 lncRNA downstream 534192 1380510 ~ 1381110 (-) False G20726
TU25778 lncRNA downstream 923303 990555 ~ 991999 (-) True G20676
TU26063 lncRNA upstream 247021 2171904 ~ 2172483 (-) True G20870
TU26116 lncRNA upstream 275170 2200053 ~ 2254560 (-) True G20908
TU26117 lncRNA upstream 275317 2200200 ~ 2308118 (-) False G20908
TU26123 lncRNA upstream 361941 2286824 ~ 2288618 (-) True G20914
TU26162 lncRNA upstream 502276 2427159 ~ 2427421 (-) True G20947
AMCG00007052 mRNA downstream 53129 1844655 ~ 1862173 (-) True AMCG00007052
AMCG00007053 mRNA downstream 90765 1821951 ~ 1824537 (-) True AMCG00007053
AMCG00007054 mRNA downstream 120663 1759494 ~ 1794639 (-) True AMCG00007054
AMCG00007051 mRNA downstream 158960 1755590 ~ 1756342 (-) True AMCG00007051
AMCG00007047 mRNA downstream 217469 1659504 ~ 1697833 (-) True AMCG00007047
AMCG00007059 mRNA upstream 217792 2142675 ~ 2196855 (-) True AMCG00007059
AMCG00007058 mRNA upstream 280245 2205128 ~ 2218145 (-) True AMCG00007058
AMCG00007057 mRNA upstream 313284 2238167 ~ 2244432 (-) True AMCG00007057
AMCG00007062 mRNA upstream 365520 2290403 ~ 2297881 (-) True AMCG00007062
AMCG00007063 mRNA upstream 377500 2302383 ~ 2310199 (-) True AMCG00007063
TU25725 other downstream 962240 952236 ~ 953062 (-) True G20630
TU25697 other downstream 1067013 845929 ~ 848289 (-) False G20609
TU26054 other upstream 219833 2144716 ~ 2145815 (-) False AMCG00007059
TU26061 other upstream 242427 2167310 ~ 2170570 (-) False AMCG00007059
TU26783 other upstream 3116776 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 3117637 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 3131904 5056787 ~ 5057406 (-) True G21429

Expression Profile